Last updated on 2020-08-07 01:50:16 CEST.
| Package | WARN | OK |
|---|---|---|
| admixr | 1 | 11 |
Current CRAN status: WARN: 1, OK: 11
Version: 0.9.1
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘qpAdm.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
ADMIXTOOLS programs required by admixr are not in your $PATH variable.
At the very least, the following programs should be available:
qp3Pop, qpDstat, qpF4ratio, qpAdm, qpWave
Make sure to modify the $PATH variable in your .Renviron file so
that it points to the directory containing the ADMIXTOOLS programs.
sh: qpAdm: not found
sh: qpAdm: not found
Quitting from lines 165-174 (qpAdm.Rmd)
Error: processing vignette 'qpAdm.Rmd' failed with diagnostics:
subscript out of bounds
--- failed re-building ‘qpAdm.Rmd’
--- re-building ‘tutorial.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
ADMIXTOOLS programs required by admixr are not in your $PATH variable.
At the very least, the following programs should be available:
qp3Pop, qpDstat, qpF4ratio, qpAdm, qpWave
Make sure to modify the $PATH variable in your .Renviron file so
that it points to the directory containing the ADMIXTOOLS programs.
── Attaching packages ─────────────────────────────────────── tidyverse 1.3.0 ──
✔ ggplot2 3.3.2 ✔ purrr 0.3.4
✔ tibble 3.0.1 ✔ dplyr 1.0.0
✔ tidyr 1.1.0 ✔ stringr 1.4.0
✔ readr 1.3.1 ✔ forcats 0.5.0
── Conflicts ────────────────────────────────────────── tidyverse_conflicts() ──
✖ dplyr::filter() masks stats::filter()
✖ dplyr::lag() masks stats::lag()
sh: column: not found
Quitting from lines 145-146 (tutorial.Rmd)
Error: processing vignette 'tutorial.Rmd' failed with diagnostics:
error in running command: 'Illegal seek'
--- failed re-building ‘tutorial.Rmd’
SUMMARY: processing the following files failed:
‘qpAdm.Rmd’ ‘tutorial.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-patched-solaris-x86