Implement cycle-Free flux balance analysis (CycleFreeFlux), cycle-free flux variability, and Random Sampling of solution space. Desouki, A. A., Jarre, F., Gelius-Dietrich, G., & Lercher, M. J. (2015). CycleFreeFlux: efficient removal of thermodynamically infeasible loops from flux distributions. Bioinformatics, 31(13), 2159-2165. <doi.org/10.1093/bioinformatics/btv096>. Flux balance analysis is a technique to find fluxes in metabolic models at steady state. It is described in Orth, J.D., Thiele, I. and Palsson, B.O. What is flux balance analysis? Nat. Biotech. 28, 245-248 (2010).
| Version: | 2.0.1 |
| Depends: | R (≥ 3.0.3), sybil, Matrix, MASS |
| Imports: | methods |
| Suggests: | cplexAPI (≥ 1.2.6), glpkAPI (≥ 1.2.1) |
| Published: | 2019-12-15 |
| Author: | Abdelmoneim Amer Desouki [aut, cre] |
| Maintainer: | Abdelmoneim Amer Desouki <abdelmoneim.amer at uni-duesseldorf.de> |
| License: | GPL-3 |
| NeedsCompilation: | no |
| Materials: | NEWS |
| CRAN checks: | sybilcycleFreeFlux results |
| Reference manual: | sybilcycleFreeFlux.pdf |
| Package source: | sybilcycleFreeFlux_2.0.1.tar.gz |
| Windows binaries: | r-devel: sybilcycleFreeFlux_2.0.1.zip, r-release: sybilcycleFreeFlux_2.0.1.zip, r-oldrel: sybilcycleFreeFlux_2.0.1.zip |
| macOS binaries: | r-release: sybilcycleFreeFlux_2.0.1.tgz, r-oldrel: sybilcycleFreeFlux_2.0.1.tgz |
| Old sources: | sybilcycleFreeFlux archive |
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