An implementation of sensitivity analysis for phylogenetic comparative methods. The package is an umbrella of statistical and graphical methods that estimate and report different types of uncertainty in PCM: (i) Species Sampling uncertainty (sample size; influential species and clades). (ii) Phylogenetic uncertainty (different topologies and/or branch lengths). (iii) Data uncertainty (intraspecific variation and measurement error).
| Version: | 0.8.5 |
| Depends: | R (≥ 3.4.0), ape (≥ 3.3), phylolm (≥ 2.4), ggplot2 (≥ 2.1.0) |
| Imports: | caper (≥ 0.5.2), phytools (≥ 0.6), geiger (≥ 2.0) |
| Suggests: | knitr, rmarkdown |
| Published: | 2020-04-02 |
| Author: | Gustavo Paterno [cre, aut], Gijsbert Werner [aut], Caterina Penone [aut], Pablo Martinez [ctb] |
| Maintainer: | Gustavo Paterno <paternogbc at gmail.com> |
| BugReports: | https://github.com/paternogbc/sensiPhy/issues |
| License: | GPL-2 |
| URL: | https://github.com/paternogbc/sensiPhy |
| NeedsCompilation: | no |
| Citation: | sensiPhy citation info |
| Materials: | NEWS |
| CRAN checks: | sensiPhy results |
| Reference manual: | sensiPhy.pdf |
| Vignettes: |
sensiPhy: R-package for sensitivity analysis in phylogenetic comparative methods |
| Package source: | sensiPhy_0.8.5.tar.gz |
| Windows binaries: | r-devel: sensiPhy_0.8.5.zip, r-release: sensiPhy_0.8.5.zip, r-oldrel: sensiPhy_0.8.5.zip |
| macOS binaries: | r-release: sensiPhy_0.8.5.tgz, r-oldrel: sensiPhy_0.8.5.tgz |
| Old sources: | sensiPhy archive |
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