rsnps 0.3.0
DEPRECATED AND DEFUNCT
ld_search() is now defunct. The Broad Insitute has taken down the SNAP service behind the function. (#46) (#53) (#60)
NEW FEATURES
- the three NCBI functions gain a new parameter
key for passing in an NCBI Entrez API key. You can alteernatively (and we encourage this) store your key as an environment variable and we’ll use that instead. The key allows you to have higher rate limits than without a key (#58)
- gains new function
ncbi_snp_summary() for summary data on a SNP (#31)
MINOR IMPROVEMENTS
- http requests are now done using
crul instead of httr (#44)
- now using markdown formatted documentation (#56)
- documented in
ncbi_snp_query() that we can not change the assembly (#49)
BUG FIXES
- fix to
ncbi_snp_query2(): when many IDs passed in, we were failing with a “URI too long” message. We now check how many Ids are passed in and do a POST request as needed (#39)
- fixed problem in
ncbi_snp_query() where it wasn’t pulling out correctly the gene name and BP position (#25)
rsnps 0.2.0
NEW FEATURES
LDSearch() is now ld_search(), but LDSearch() still works until the next CRAN release when it will be defunct (#33)NCBI_snp_query() is now ncbi_snp_query(), but NCBI_snp_query() still works until the next CRAN release when it will be defunct (#33)NCBI_snp_query2() is now ncbi_snp_query2(), but NCBI_snp_query2() still works until the next CRAN release when it will be defunct (#33)
MINOR IMPROVEMENTS
- Namespace all base R package function calls (#21)
- Improve
httr::content call to parse to text, and encoding = "UTF-8" (#24)
- Added tests for
ld_search() (#12)
- Added tests for
ncbi_snp_query() and ncbi_snp_query2() (#13)
- Added ancestral allele output to
ncbi_snp_query() (#23)
BUG FIXES
- Fix to
fetch_genotypes(), was failing sometimes when the commented metadata lines at top varied in length (#22)
- Fix to
ld_search() (#32)
rsnps 0.1.6
MINOR IMPROVEMENTS
- All examples now in
\dontrun. (#11)
- Added additional tests for
LDSearch() and NCBI_snp_query().
- Added a vignette.
BUG FIXES
- Bugs fixed in
LDSearch(), which were actually bugs in NCBI_snp_query(). (#9)
- Bug fixed in
NCBI_snp_query() as chromosome might also be “X”.
rsnps 0.1.0
NEW FEATURES
- Bug fixes to all openSNP functions.
rsnps 0.0.5
NEW FEATURES