To cite the rnetcarto package in publications use:

Doulcier G and Stouffer D (2015). Rnetcarto: Fast Network Modularity and Roles Computation by Simulated Annealing. R package version 0.2.4.

Original articles about functional roles:

Guimera R and Nunes Amaral L (2005). “Functional cartography of complex metabolic networks.” Nature. doi: 10.1038/nature03288.

Guimera R and Nunes Amaral L (2005). “Cartography of complex networks: modules and universal roles.” Journal of Statistical Mechanics: Theory and Experiment. doi: 10.1088/1742-5468/2005/02/P02001.

For the bipartite modularity definition for unweighted bipartite networks use:

Guimera R, Sales-Pardo M and Nunes Amaral L (2007). “Module identification in bipartite and directed networks.” Physical Review E. doi: 10.1103/PhysRevE.76.036102.

For the bipartite modularity definition for weighted bipartite networks use:

Stouffer D, Sales-Pardo M, Sirer M and Bascompte J (2012). “Evolutionary Conservation of Species' Roles in Food Webs.” Science. doi: 10.1126/science.1216556, (Supl. materials).

Corresponding BibTeX entries:

  @Manual{,
    title = {Rnetcarto: Fast Network Modularity and Roles Computation
      by Simulated Annealing},
    author = {Guilhem Doulcier and Daniel B. Stouffer},
    year = {2015},
    note = {R package version 0.2.4},
  }

  @Article{,
    title = {Functional cartography of complex metabolic networks},
    author = {Roger Guimera and Luis A. {Nunes Amaral}},
    year = {2005},
    journal = {Nature},
    doi = {10.1038/nature03288},
  }

  @Article{,
    title = {Cartography of complex networks: modules and universal
      roles},
    author = {Roger Guimera and Luis A. {Nunes Amaral}},
    year = {2005},
    journal = {Journal of Statistical Mechanics: Theory and
      Experiment},
    doi = {10.1088/1742-5468/2005/02/P02001},
  }

  @Article{,
    title = {Module identification in bipartite and directed networks},
    author = {Roger Guimera and Marta Sales-Pardo and Luis A. {Nunes
      Amaral}},
    year = {2007},
    journal = {Physical Review E},
    doi = {10.1103/PhysRevE.76.036102},
  }

  @Article{,
    title = {Evolutionary {Conservation} of {Species}' {Roles} in
      {Food} {Webs}},
    author = {Daniel B Stouffer and Marta Sales-Pardo and M. Irmak
      Sirer and Jordi Bascompte},
    year = {2012},
    journal = {Science},
    note = {(Supl. materials)},
    doi = {10.1126/science.1216556},
  }