library(rgexf)
# Random graph demo
set.seed(11)
# Vertex
n <- 30
prb <- .3
vertex1 <- data.frame(id=1:n,label=1:n)
vertex2 <- data.frame(id=(n+1):(2*n),label=(n+1):(2*n))
vertex3 <- data.frame(id=(2*n+1):(3*n),label=(2*n+1):(3*n))
# Edges
edges1 <- combn(vertex1$label,2)
edges1 <- edges1[,which(runif(ncol(edges1)) > (1-prb))]
edges1 <- data.frame(source=edges1[1,],target=edges1[2,])
edges2 <- combn(vertex2$label,2)
edges2 <- edges2[,which(runif(ncol(edges2)) > (1-prb))]
edges2 <- data.frame(source=edges2[1,],target=edges2[2,])
edges3 <- combn(vertex3$label,2)
edges3 <- edges3[,which(runif(ncol(edges3)) > (1-prb))]
edges3 <- data.frame(source=edges3[1,],target=edges3[2,])
# Visual attributes
size <- runif(n,max=100)
color <- terrain.colors(n)
color <- color[order(runif(n))][1:n]
color <- cbind(t(col2rgb(color)),1)
color2 <- heat.colors(n)
color2 <- color2[order(runif(n))][1:n]
color2 <- cbind(t(col2rgb(color2)),1)
color3 <- topo.colors(n)
color3<- color3[order(runif(n))][1:n]
color3 <- cbind(t(col2rgb(color3)),1)
# Nice layout
pos <- matrix(0, nrow=n, ncol=3)
for (i in 2:n) {
pos[i,1] <- pos[i-1,1] + cos(2*pi*(i*1.7-1)/n)
pos[i,2] <- pos[i-1,2] + sin(2*pi*(i-1)/n)
}
pos <- pos/(max(pos)-min(pos))
pos2 <- pos
pos2[,1] <- pos2[,1] + max(pos2[,1])-min(pos[,1])
pos3 <- pos
pos3[,1] <- pos3[,1] + max(pos2[,1])-min(pos[,1])
# Plotting
graph <- gexf(
rbind(vertex1,vertex2,vertex3),
rbind(edges1, edges2,edges3),
nodesVizAtt=list(
size=c(size,size,size),
color=rbind(color,color2,color3),
position=rbind(pos,pos2,pos3))
)
graph## <?xml version="1.0" encoding="UTF-8"?>
## <gexf xmlns="http://www.gexf.net/1.3" xmlns:viz="http://www.gexf.net/1.3/viz" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.gexf.net/1.3 http://www.gexf.net/1.3/gexf.xsd" version="1.3">
## <meta lastmodifieddate="2020-02-13">
## <creator>NodosChile</creator>
## <description>A GEXF file written in R with "rgexf"</description>
## <keywords>GEXF, NodosChile, R, rgexf, Gephi</keywords>
## </meta>
## <graph mode="static" defaultedgetype="undirected">
## <nodes>
## <node id="1" label="1">
## <viz:color r="233" g="187" b="62" a="1"/>
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