Client for the Citoid service https://www.mediawiki.org/wiki/Citoid
docs: https://en.wikipedia.org/api/rest_v1/#!/Citation/getCitation
There are two functions, both of which do the same things, except:
cit_oid(): parses textcit_oid_(): does not parse text, you can parse later yourselfEven with cit_oid() though, you get a list of lists, and you may want to parse it to a data.frame. See an example below.
Stable version
{r eval=FALSE} install.packages("rcitoid")
Development version
Load the package
use underscore method to get text
cit_oid_("10.1108/jd-12-2013-0166")
#> [[1]]
#> [1] "[{\"key\":\"6MJT5KS8\",\"version\":0,\"itemType\":\"webpage\",\"url\":\"https://www.emeraldinsight.com/action/captchaChallenge?redirectUrl=https%3A%2F%2Fwww.emeraldinsight.com%2Fdoi%2Fabs%2F10.1108%2FJD-12-2013-0166&\",\"title\":\"EmeraldInsight\",\"accessDate\":\"2019-02-07\",\"websiteTitle\":\"www.emeraldinsight.com\",\"DOI\":\"10.1108/jd-12-2013-0166\",\"source\":[\"Zotero\"]}]"
#> attr(,"type")
#> [1] "json"DOI
cit_oid("10.1108/jd-12-2013-0166")
#> [[1]]
#> [[1]]$key
#> [1] "LH2YV53X"
#>
#> [[1]]$version
#> [1] 0
#>
#> [[1]]$itemType
#> [1] "webpage"
#>
...PMID
cit_oid(30446726)
#> [[1]]
#> [[1]]$key
#> [1] "M5TVWR6J"
#>
#> [[1]]$version
#> [1] 0
#>
#> [[1]]$itemType
#> [1] "journalArticle"
#>
...PMCID
cit_oid("PMC4679344")
#> [[1]]
#> [[1]]$key
#> [1] "TCAHDCFP"
#>
#> [[1]]$version
#> [1] 0
#>
#> [[1]]$itemType
#> [1] "journalArticle"
#>
...ISBN
cit_oid(1439895619)
#> [[1]]
#> [[1]]$itemType
#> [1] "book"
#>
#> [[1]]$title
#> [1] "Agroecology : the ecology of sustainable food systems"
#>
#> [[1]]$oclc
#> [1] "744303838"
#>
...because the resulting data is nested and can have missing data slots, it’s probably easier to get raw text and manipulate from there.
library(dplyr)
pmid <- c(30446726, 30722046, 30687373, 30688010)
pmcid <- c("PMC4679344", "PMC6347797", "PMC6347793")
isbn <- 1439895619
dois <- c("10.1109/jsac.2011.110806", "10.1007/s00422-006-0078-4",
"10.5040/9781474219624-0044", "10.1109/icemi.2009.5274826",
"10.1109/wispnet.2017.8299996")
res <- cit_oid_(id = c(pmid, pmcid, isbn, dois))
tbl_df(bind_rows(lapply(res, jsonlite::fromJSON)))
#> # A tibble: 13 x 33
#> key version itemType tags title ISSN journalAbbrevia…
#> <chr> <int> <chr> <lis> <chr> <lis> <chr>
#> 1 23YF… 0 journal… <lis… Enha… <chr… Mucosal Immunol
#> 2 QJ6Z… 0 journal… <lis… Shar… <chr… Mol. Biol. Evol.
#> 3 VEBC… 0 journal… <dat… Resp… <chr… Front Plant Sci
#> 4 IBDH… 0 journal… <dat… A mi… <chr… Integr Zool
#> 5 WPYN… 0 journal… <lis… ESMO… <NUL… <NA>
#> 6 6R5T… 0 journal… <lis… Effi… <chr… J Orthop Surg R…
#> 7 GU4E… 0 journal… <lis… Iden… <chr… J Hematol Oncol
#> 8 <NA> NA book <NUL… Agro… <NUL… <NA>
#> 9 NFGJ… 0 journal… <dat… Anti… <chr… <NA>
#> 10 J7FD… 0 journal… <dat… The … <chr… Biol Cybern
#> 11 ACWN… 0 webpage <lis… Bahm… <NUL… <NA>
#> 12 8G39… 0 confere… <dat… Desi… <NUL… <NA>
#> 13 EVQU… 0 confere… <dat… Traf… <NUL… <NA>
#> # … with 26 more variables: publicationTitle <chr>, date <chr>,
#> # abstractNote <chr>, DOI <chr>, extra <chr>, libraryCatalog <chr>,
#> # url <chr>, accessDate <chr>, author <list>, PMID <chr>, source <list>,
#> # pages <chr>, volume <chr>, shortTitle <chr>, PMCID <chr>,
#> # language <chr>, issue <chr>, oclc <chr>, ISBN <list>, edition <chr>,
#> # place <chr>, numPages <chr>, contributor <list>, websiteTitle <chr>,
#> # proceedingsTitle <chr>, conferenceName <chr>rcitoid in R doing citation(package = 'rcitoid')