[aut, cre, cph]A toolkit for working with Biological Observation Matrix ('BIOM') files. Features include reading/writing all 'BIOM' formats, rarefaction, alpha diversity, beta diversity (including 'UniFrac'), summarizing counts by taxonomic level, and sample subsetting. Standalone functions for reading, writing, and subsetting phylogenetic trees are also provided. All CPU intensive operations are encoded in C with multi-thread support.
| Version: | 1.0.2 |
| Depends: | R (≥ 3.5.0) |
| Imports: | magrittr, methods, plyr, Rcpp, RcppParallel, R.utils, rjson, slam, openxlsx |
| LinkingTo: | Rcpp, RcppParallel |
| Suggests: | ape, reshape2, rhdf5, testthat |
| Published: | 2020-05-29 |
| Author: | Daniel P. Smith
[aut, cre, cph] |
| Maintainer: | Daniel P. Smith <dansmith at orst.edu> |
| BugReports: | https://github.com/cmmr/rbiom/issues |
| License: | AGPL-3 |
| URL: | https://cmmr.github.io/rbiom/index.html |
| NeedsCompilation: | yes |
| Materials: | README |
| CRAN checks: | rbiom results |
| Reference manual: | rbiom.pdf |
| Package source: | rbiom_1.0.2.tar.gz |
| Windows binaries: | r-devel: rbiom_1.0.2.zip, r-release: rbiom_1.0.2.zip, r-oldrel: rbiom_1.0.2.zip |
| macOS binaries: | r-release: rbiom_1.0.2.tgz, r-oldrel: rbiom_1.0.2.tgz |
| Old sources: | rbiom archive |
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