MINOR CHANGE: There is now an option to compress the output files, which is turned on by default.
MINOR CHANGE: Allow unix systems to use rsync
instead of cp
for fetching the qsub output.
BUG FIX: Fix qsub_retrieve()
when processing the output; it did not take into account that batch_tasks
could not be equal to 1.
MINOR CHANGE: qsub_retrieve()
now uses pbapply when loading in the output.
BUG FIX: Test ssh connection pointer before using it.
BUG FIX: Do not remove the first line of an error file.
MINOR CHANGE: Use absolute paths to output standard output and error logs (#16, suggested by @mmehan).
MINOR CHANGE; Allow rsync to also use the username@host:port notation (#16, suggested by @mmehan).
qsub
command.