A tool for analyzing the transcription, processing and degradation rates of genes by 4sU-seq (the Metabolic Label 4-thiouridine) data and RNA-seq (RNA sequencing) data. It can not only recognize the transcriptional dynamic rates at the measurement time points, but also obtain continuous changes in transcriptional dynamics. More importantly, it is able to predict the trend of mRNA (Mature RNA) transcription and expression changes in the future.
| Version: | 0.1.0 |
| Depends: | R (≥ 3.4.0) |
| Imports: | AnnotationDbi, SummarizedExperiment, Rsamtools, Biobase, S4Vectors, methods, parallel, GenomicFeatures, ggplot2, grid, GenomicAlignments |
| Suggests: | knitr, rmarkdown, TxDb.Hsapiens.UCSC.hg19.knownGene |
| Published: | 2019-05-17 |
| Author: | XinWang |
| Maintainer: | XinWang <xindd_2014 at 163.com> |
| License: | GPL-2 |
| URL: | https://github.com/bioWzz/pulseTD_0.1.0 |
| NeedsCompilation: | no |
| Materials: | README |
| CRAN checks: | pulseTD results |
| Reference manual: | pulseTD.pdf |
| Vignettes: |
pulseTD |
| Package source: | pulseTD_0.1.0.tar.gz |
| Windows binaries: | r-devel: pulseTD_0.1.0.zip, r-release: pulseTD_0.1.0.zip, r-oldrel: pulseTD_0.1.0.zip |
| macOS binaries: | r-release: pulseTD_0.1.0.tgz, r-oldrel: not available |
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