preseqR: Predicting Species Accumulation Curves
Originally as an R version of Preseq <doi:10.1038/nmeth.2375>, the package has extended its functionality to predict the r-species accumulation curve (r-SAC), which is the number of species represented at least r times as a function of the sampling effort. When r = 1, the curve is known as the species accumulation curve, or the library complexity curve in high-throughput genomic sequencing. The package includes both parametric and nonparametric methods, as described by Deng C, et al. (2018) <arXiv:1607.02804v3>.
| Version: |
4.0.0 |
| Imports: |
polynom, graphics, stats |
| Published: |
2018-06-27 |
| Author: |
Chao Deng, Timothy Daley and Andrew D. Smith |
| Maintainer: |
Chao Deng <chaodeng at usc.edu> |
| License: |
GPL-3 |
| NeedsCompilation: |
no |
| Citation: |
preseqR citation info |
| Materials: |
README |
| CRAN checks: |
preseqR results |
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