Fits by ABC, the parameters of a stochastic process modelling the phylogeny and evolution of a suite of traits following the tree. The user may define an arbitrary Markov process for the trait and phylogeny. Importantly, trait-dependent speciation models are handled and fitted to data. See K. Bartoszek, P. Lio' (2019) <10.5506/APhysPolBSupp.12.25>. The suggested geiger package can be obtained from CRAN's archive <https://cran.r-project.org/src/contrib/Archive/geiger/>, suggested to take latest version. Otherwise its required code is present in the pcmabc package. The suggested distory package can be obtained from CRAN's archive <https://cran.r-project.org/src/contrib/Archive/distory/>, suggested to take latest version. Both distory and geiger are orphaned at the moment.
| Version: | 1.1 |
| Depends: | R (≥ 2.9.1) |
| Imports: | ape (≥ 3.0.6), graphics, methods, mvSLOUCH, phangorn, stats, TreeSim, utils, yuima |
| Suggests: | geiger, distory |
| Published: | 2020-01-22 |
| Author: | Krzysztof Bartoszek, Pietro Lio' |
| Maintainer: | Krzysztof Bartoszek <krzbar at protonmail.ch> |
| License: | GPL-2 | GPL-3 | file LICENCE [expanded from: GPL (≥ 2) | file LICENCE] |
| NeedsCompilation: | no |
| Citation: | pcmabc citation info |
| CRAN checks: | pcmabc results |
| Reference manual: | pcmabc.pdf |
| Package source: | pcmabc_1.1.tar.gz |
| Windows binaries: | r-devel: pcmabc_1.1.zip, r-release: pcmabc_1.1.zip, r-oldrel: pcmabc_1.1.zip |
| macOS binaries: | r-release: pcmabc_1.1.tgz, r-oldrel: pcmabc_1.1.tgz |
| Old sources: | pcmabc archive |
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