A pre-processor for mrBayes that assimilates sequences, taxonomic information and tree constraints as per xxx. The main functions of interest for most users will be pastis_simple, pastis_main and conch. The main analysis is conducted with pastis_simple or pastis_main followed by a manual execution of mrBayes (>3.2). The placement of taxa not contained in the tree constraint can be investigated using conch.
| Version: | 0.1-2 |
| Depends: | R (≥ 2.10), caper (≥ 0.5.0), ape (≥ 3.0.0) |
| Published: | 2013-09-11 |
| Author: | Gavin Thomas [aut, cre] |
| Maintainer: | Gavin Thomas <gavin.thomas at sheffield.ac.uk> |
| License: | GPL (≥ 3) |
| URL: | http://cran.r-project.org/web/packages/pastis/ |
| NeedsCompilation: | no |
| In views: | Phylogenetics |
| CRAN checks: | pastis results |
| Reference manual: | pastis.pdf |
| Vignettes: |
Using PASTIS |
| Package source: | pastis_0.1-2.tar.gz |
| Windows binaries: | r-devel: pastis_0.1-2.zip, r-release: pastis_0.1-2.zip, r-oldrel: pastis_0.1-2.zip |
| macOS binaries: | r-release: pastis_0.1-2.tgz, r-oldrel: pastis_0.1-2.tgz |
| Old sources: | pastis archive |
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