Analysis of molecular marker data from model (backcrosses, F2 and recombinant inbred lines) and non-model systems (i. e. outcrossing species). For the later, it allows statistical analysis by simultaneously estimating linkage and linkage phases (genetic map construction) according to Wu et al. (2002) <doi:10.1006/tpbi.2002.1577>. All analysis are based on multipoint approaches using hidden Markov models.
| Version: | 2.1.3 |
| Depends: | R (≥ 3.6.0) |
| Imports: | ggplot2 (≥ 2.2.1), plotly (≥ 4.7.1), reshape2 (≥ 1.4.1), Rcpp (≥ 0.10.5), graphics, methods, stats, utils, grDevices, MDSMap |
| LinkingTo: | Rcpp (≥ 0.10.5) |
| Suggests: | qtl (≥ 1.36-6), knitr (≥ 1.10), rmarkdown, htmlwidgets, vcfR (≥ 1.6.0) |
| Published: | 2020-02-17 |
| Author: | Gabriel Margarido [aut], Marcelo Mollinari [aut], Karl Broman [ctb], Getulio Ferreira [ctb], Rodrigo Amadeu [ctb], Cristiane Taniguti [ctb, cre], Augusto Garcia [aut, ctb] |
| Maintainer: | Cristiane Taniguti <chtaniguti at usp.br> |
| BugReports: | https://github.com/augusto-garcia/onemap/wiki |
| License: | GPL-3 |
| URL: | https://github.com/augusto-garcia/onemap |
| NeedsCompilation: | yes |
| Citation: | onemap citation info |
| CRAN checks: | onemap results |
| Reference manual: | onemap.pdf |
| Vignettes: |
Inbred Based Populations Introduction to R Outcrossing Populations Overview |
| Package source: | onemap_2.1.3.tar.gz |
| Windows binaries: | r-devel: onemap_2.1.3.zip, r-release: onemap_2.1.3.zip, r-oldrel: onemap_2.1.3.zip |
| macOS binaries: | r-release: onemap_2.1.3.tgz, r-oldrel: onemap_2.1.3.tgz |
| Old sources: | onemap archive |
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