multimark 2.1.2 2020-02-05
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CHANGES

* remove unnecessary dependencies on doParallel, foreach, and doRNG

* tweaked tests in order to pass MKL case at CRAN


multimark 2.1.1 2019-11-25
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CHANGES

* for SCR models, the suggested tolerance limit from sp::points2grid is now used when 'studyArea' coordinate intervals are not constant

* for SCR models, studyArea rows are now forced to be ordered by raster cell order (i.e. left to right, top to bottom)


multimark 2.1.0 2019-04-21
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CHANGES

* clusterSetRNGStream now used for reproducible parallel processing

* added error trap to processdataSCR if Enc.Mat includes non-zero encounters on inactive traps

* NAMESPACE now generated using roxygen2

BUG FIXES

* when using processdataSCR to generate a study area, the number of grid cells are now automatically adjusted to ensure cells are square


multimark 2.0.1 2017-06-30
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NEW FEATURES

* Added bobcatSCR example data for spatial capture-recapture analysis using multimarkClosedSCR

BUG FIXES

* Typo corrections in help files


multimark 2.0.0 2016-05-23
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NEW FEATURES

* Added spatial capture-recapture model of Royle et al. (2009) using a semi-complete data likelihood (King et al. 2016)

* Added tiger example data for spatial capture-recapture analysis using markClosedSCR

* Increased capacity for handling hundreds of sampling occasions


multimark 1.3.2 2015-12-18
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BUG FIXES

* Allow delta_B = 0 (i.e. 1 - (delta_1 + delta_2) = 0) in 'simdataCJS()' and 'simdataClosed();


multimark 1.3.1 2015-10-20
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CHANGES

* Updated citations for 'multimark'

BUG FIXES

* Typo corrections in help files


multimark 1.3.0 2015-07-27
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NEW FEATURES

* 'markClosed()' and 'markCJS()' wrappers facilitate ``conventional'' capture-recapture analysis with a single mark type; Bayesian multimodel inference using 'multimodelClosed()' and 'multimodelCJS()' can also be implemented with output from these ``conventional'' models

CHANGES

* 'mms' no longer an argument for 'multimodelClosed()' or 'multimodelCJS()'; these data are now returned with individual model output for additional error checking

* CJS latent variable 'z' now denoted as 'q'

BUG FIXES

* Fixed bug in 'multimarkClosed()' when all encounter histories are known


multimark 1.2.0 2015-06-23
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NEW FEATURES

* Beta prior for 'psi' parameter can now be user specified in 'multimarkCJS()' and 'multimarkClosed()' using 'a0psi' and 'b0psi' arguments

* burn-in and thinning interval can now be user specified in 'multimodelCJS()' and 'multimodelClosed()' using 'mburnin' and 'mthin' arguments

CHANGES

* Minor bug fixes in updates for 'psi', 'sigma2_zp', and 'sigma2_zphi' in 'multimarkCJS()'

* developed using R version 3.2.1 (2015-06-18); 'multimark' now requires R >=3.2.1 for compatibility with changes to base function 'nchar()'


multimark 1.1.4 2015-04-29
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NEW FEATURES

* parallel processing now used in 'multimodelCJS()' and 'multimodelClosed()' for >1 chains

CHANGES

* parallel processing now only used with >1 chains in 'multimarkCJS()' and 'multimarkClosed()'

* modified chain progress printing for 'multimarkCJS()', 'multimarkClosed()', 'multimodelCJS()' and 'multimodelClosed()'

* temporal trend (Time) predictors centered around zero

* updated package citation

* modification to documentation to avoid overflow on pdf

* developed using R version 3.2.0 (2015-04-16)


multimark 1.1.3 2015-04-16
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Initial CRAN posting