Provides the 'Molecular Signatures Database' (MSigDB) gene sets typically used with the 'Gene Set Enrichment Analysis' (GSEA) software (Subramanian et al. 2005 <doi:10.1073/pnas.0506580102>, Liberzon et al. 2015 <doi:10.1016/j.cels.2015.12.004>) in a standard R data frame with key-value pairs. The package includes the original human gene symbols and NCBI/Entrez IDs as well as the equivalents for frequently studied model organisms such as mouse, rat, pig, fly, and yeast.
| Version: | 7.1.1 |
| Depends: | R (≥ 3.2.0) |
| Imports: | magrittr, rlang, dplyr (≥ 0.7.0), tibble |
| Suggests: | testthat, knitr, rmarkdown |
| Published: | 2020-05-14 |
| Author: | Igor Dolgalev [aut, cre] |
| Maintainer: | Igor Dolgalev <igor.dolgalev at nyumc.org> |
| BugReports: | https://github.com/igordot/msigdbr/issues |
| License: | MIT + file LICENSE |
| URL: | https://github.com/igordot/msigdbr |
| NeedsCompilation: | no |
| Materials: | README NEWS |
| CRAN checks: | msigdbr results |
| Reference manual: | msigdbr.pdf |
| Vignettes: |
Introduction to the msigdbr package |
| Package source: | msigdbr_7.1.1.tar.gz |
| Windows binaries: | r-devel: msigdbr_7.1.1.zip, r-release: msigdbr_7.1.1.zip, r-oldrel: msigdbr_7.1.1.zip |
| macOS binaries: | r-release: msigdbr_7.1.1.tgz, r-oldrel: msigdbr_7.1.1.tgz |
| Old sources: | msigdbr archive |
| Reverse imports: | AutoPipe, hypeR, MAGeCKFlute, netgsa, pathfindR, scTGIF |
| Reverse suggests: | tidybulk |
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