Resolves complex metagenomic mixtures by analysing deep sequencing data, using a mixture model based approach. The use of parallel Monte Carlo Markov chains for the exploration of the species space enables the identification of the set of species more likely to contribute to the mixture.
| Version: | 0.3 |
| Depends: | R (≥ 3.2) |
| Imports: | data.table (≥ 1.9.2), Matrix, gtools, Rmpi, ggplot2 |
| Suggests: | knitr |
| Published: | 2019-02-11 |
| Author: | Sofia Morfopoulou |
| Maintainer: | Sofia Morfopoulou <sofia.morfopoulou.10 at ucl.ac.uk> |
| License: | GPL-3 |
| NeedsCompilation: | yes |
| SystemRequirements: | Open MPI (>=1.4.3) |
| CRAN checks: | metaMix results |
| Reference manual: | metaMix.pdf |
| Vignettes: |
metaMix User Guide |
| Package source: | metaMix_0.3.tar.gz |
| Windows binaries: | r-devel: metaMix_0.3.zip, r-release: metaMix_0.3.zip, r-oldrel: metaMix_0.3.zip |
| macOS binaries: | r-release: not available, r-oldrel: not available |
| Old sources: | metaMix archive |
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