Functions for fitting various models to capture-recapture data
including mixed-effects Cormack-Jolly-Seber(CJS) and multistate models and
the multi-variate state model structure for survival
estimation and POPAN structured Jolly-Seber models for abundance estimation.
There are also Hidden Markov model (HMM) implementations of CJS and multistate
models with and without state uncertainty and a simulation capability for HMM
models.
| Version: |
1.2.6 |
| Depends: |
R (≥ 3.5.0), lme4, methods, parallel |
| Imports: |
graphics, stats, utils, R2admb, truncnorm, coda, Matrix, numDeriv, expm, Rcpp (≥ 0.9.13), TMB, optimx (≥ 2013.8.6), data.table, knitr, kableExtra, bookdown |
| LinkingTo: |
Rcpp |
| Suggests: |
ggplot2 |
| Published: |
2019-12-09 |
| Author: |
Jeff Laake, Devin Johnson, Paul Conn, example for simHMM
from Jay Rotella |
| Maintainer: |
Jeff Laake <jefflaake at gmail.com> |
| License: |
GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: |
yes |
| SystemRequirements: |
ADMB version 11 <http://admb-project.org/> for
use.admb=TRUE; see readme.txt |
| Citation: |
marked citation info |
| Materials: |
NEWS |
| In views: |
Environmetrics |
| CRAN checks: |
marked results |