Calculate comorbidities, medical risk scores, and work very quickly and precisely with ICD-9 and ICD-10 codes. This package enables a work flow from raw tables of ICD codes in hospital databases to comorbidities. ICD-9 and ICD-10 comorbidity mappings from Quan (Deyo and Elixhauser versions), Elixhauser and AHRQ included. Common ambiguities and code formats are handled. Comorbidity computation includes Hierarchical Condition Codes, and an implementation of AHRQ Clinical Classifications. Risk scores include those of Charlson and van Walraven. US Clinical Modification, Word Health Organization, Belgian and French ICD-10 codes are supported, most of which are downloaded on demand.
Version: | 4.0.9 |
Depends: | R (≥ 3.4) |
Imports: | methods, Rcpp (≥ 0.12.3) |
LinkingTo: | Rcpp (≥ 0.12.3), RcppEigen |
Suggests: | graphics, httr, jsonlite, knitr, magrittr, nhds, readxl, rmarkdown (≥ 1.11), RODBC, roxygen2 (≥ 5.0.0), stats, testthat (≥ 0.11.1), utils, xml2 |
Published: | 2020-05-31 |
Author: | Jack O. Wasey [aut, cre, cph], William Murphy [ctb] (Van Walraven scores), Anobel Odisho [ctb] (CMS Hierarchical Condition Codes), Vitaly Druker [ctb] (AHRQ CCS), Ed Lee [ctb] (explain codes in table format), Patrick McCormick [ctb] (Multiple great pull requests), Alessandro Gasparini [ctb], Michel Lang [aut] (backport of R_user-dir for R version >4. ORCID = 0000-0001-9754-0393), R Core Team [aut, cph] (utils::askYesNo backport and m4 script for OpenMP detection.) |
Maintainer: | Jack O. Wasey <jack at jackwasey.com> |
BugReports: | https://github.com/jackwasey/icd/issues |
License: | GPL-3 |
Copyright: | See file (inst/)COPYRIGHTS icd copyright details |
URL: | https://jackwasey.github.io/icd/ |
NeedsCompilation: | yes |
Language: | en-US |
Materials: | README NEWS |
CRAN checks: | icd results |
Reference manual: | icd.pdf |
Vignettes: |
Using Hierarchical Condition Codes ICD-10 comorbidities Pediatric Complex Chronic Conditions Charlson and Van Walraven scores Comparing Comorbidity Mappings Quick custom comorbidity maps are helpful An Introduction to icd Ranges of ICD codes Working with World Health Organization ICD codes and national editions, and different languages icd: Efficient Computation of Comorbidities from ICD Codes Using Sparse Matrix Multiplication in R |
Package source: | icd_4.0.9.tar.gz |
Windows binaries: | r-devel: icd_4.0.9.zip, r-release: icd_4.0.9.zip, r-oldrel: icd_4.0.9.zip |
macOS binaries: | r-release: icd_4.0.9.tgz, r-oldrel: icd_4.0.9.tgz |
Old sources: | icd archive |
Reverse suggests: | icd.data, nhds |
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