Update citation with full MPMI citation
Remove an extra “/” in the CITATION’s DOI
Fix issue in CITATION file where nasapower was referred to in text
Use ROxygen 7.0.0
plot() is now defunct. Use autoplot() to plot hagis objects in place of plot(). This is to avoid the side-effect of generating and displaying a plot every time plot() is called, which can be troublesome when using ggplot2 themes since it created two plots, the original with the base theme and the new themed plotRename output column N_susc to N_virulent_isolates
Don’t round results from summarize_gene() or calculate_complexities() before returning values to user
Implement fix suggested by @zkamvar to ensure that the user-input data is not changed from a data.frame or tibble object to a data.table object in the R session
Add ability to sort graph x-axis in ascending or descending order based on the y-axis values rather than only by gene or complexity.
Move example data set into internal data and provide documentation for them
Provide documentation for how diversity indices are calculated along with mathematical notation where possible to display
Calculate Shannon and Simpson indices internally rather than rely on vegan to reduce number of Dependencies
Replace the term field with column in documentation
Test coverage now 100 %
Add funding agencies to DESCRIPTION Authors@R field
Initial CRAN release
Completely new R-package format rather than just Rmd and script files.