[aut, cre]Implements readers and writers for file formats associated with genetics data. Reading and writing plink BED/BIM/FAM formats is fully supported, including a lightning-fast BED reader and writer implementations. Other functions are 'readr' wrappers that are more constrained, user-friendly, and efficient for these particular applications; handles plink and eigenstrat tables (FAM, BIM, IND, and SNP files). There are also "make" functions for FAM and BIM tables with default values to go with simulated genotype data.
| Version: | 1.0.12 |
| Imports: | readr, tibble, Rcpp |
| LinkingTo: | Rcpp |
| Suggests: | testthat, knitr, rmarkdown, lfa, BEDMatrix, snpStats, pryr |
| Published: | 2019-12-17 |
| Author: | Alejandro Ochoa
[aut, cre] |
| Maintainer: | Alejandro Ochoa <alejandro.ochoa at duke.edu> |
| BugReports: | https://github.com/OchoaLab/genio/issues |
| License: | GPL-3 |
| URL: | https://github.com/OchoaLab/genio |
| NeedsCompilation: | yes |
| Materials: | README NEWS |
| CRAN checks: | genio results |
| Reference manual: | genio.pdf |
| Vignettes: |
Read and write BED files with genio |
| Package source: | genio_1.0.12.tar.gz |
| Windows binaries: | r-devel: genio_1.0.12.zip, r-release: genio_1.0.12.zip, r-oldrel: genio_1.0.12.zip |
| macOS binaries: | r-release: genio_1.0.12.tgz, r-oldrel: genio_1.0.12.tgz |
| Old sources: | genio archive |
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