"geneListPie" package is for mapping a gene list to function categories defined in GOSlim or Kegg. The results can be plotted as a pie chart to provide a quick view of the genes distribution of the gene list among the function categories. The gene list must contain a list of gene symbols. The package contains a set of pre-processed gene sets obtained from Gene Ontology and MSigDB including human, mouse, rat and yeast. To provide a high level concise view, only GO slim and kegg are provided. The gene sets are regulared updated. User can also use customized gene sets. User can use the R Pie() or Pie3D() function for plotting the pie chart. Users can also choose to output the gene function mapping results and use external software such as Excel(R) for ploting.
Version: | 1.0 |
Depends: | R (≥ 2.10) |
Suggests: | plotrix |
Published: | 2012-07-23 |
Author: | Xutao Deng |
Maintainer: | Xutao Deng <xutaodeng at gmail.com> |
License: | GPL-3 |
NeedsCompilation: | no |
CRAN checks: | geneListPie results |
Reference manual: | geneListPie.pdf |
Package source: | geneListPie_1.0.tar.gz |
Windows binaries: | r-devel: geneListPie_1.0.zip, r-release: geneListPie_1.0.zip, r-oldrel: geneListPie_1.0.zip |
macOS binaries: | r-release: geneListPie_1.0.tgz, r-oldrel: geneListPie_1.0.tgz |
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