For a given metabolic network, this package finds the gaps (metabolites not produced or not consumed in any other reaction), and fills it from the stoichiometric reactions of a reference metabolic reconstruction using a weighting function. Also the option to download all the set of gene-associated stoichiometric reactions for a specific organism from the KEGG database <http://www.genome.jp/kegg/> is available.
| Version: | 0.2 |
| Imports: | KEGGREST, minval (≥ 0.5), sybil |
| Published: | 2018-03-18 |
| Author: | Daniel Osorio [aut, cre], Kelly Botero [aut], Janneth Gonzalez [aut, ths], Andres Pinzon [aut] |
| Maintainer: | Daniel Osorio <dcosorioh at unal.edu.co> |
| License: | GPL-2 |
| NeedsCompilation: | no |
| Materials: | README |
| CRAN checks: | g2f results |
| Reference manual: | g2f.pdf |
| Package source: | g2f_0.2.tar.gz |
| Windows binaries: | r-devel: g2f_0.2.zip, r-release: g2f_0.2.zip, r-oldrel: g2f_0.2.zip |
| macOS binaries: | r-release: not available, r-oldrel: g2f_0.2.tgz |
| Old sources: | g2f archive |
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