Provides functions to read and write neuroimaging data in various file formats, with a focus on 'FreeSurfer' <http://freesurfer.net/> formats. This includes, but is not limited to, the following file formats: 1) MGH/MGZ format files, which can contain multi-dimensional images or other data. Typically they contain time-series of three-dimensional brain scans acquired by magnetic resonance imaging (MRI). They can also contain vertex-wise measures of surface morphometry data. The MGH format is named after the Massachusetts General Hospital, and the MGZ format is a compressed version of the same format. 2) 'FreeSurfer' morphometry data files in binary 'curv' format. These contain vertex-wise surface measures, i.e., one scalar value for each vertex of a brain surface mesh. These are typically values like the cortical thickness or brain surface area at each vertex. 3) Annotation file format. This contains a brain surface parcellation derived from a cortical atlas. 4) Surface file format. Contains a brain surface mesh, given by a list of vertices and a list of faces.
Version: | 0.1.11 |
Imports: | pkgfilecache (≥ 0.1.1), xml2 |
Suggests: | knitr, rmarkdown, testthat (≥ 2.1.0), oro.nifti (≥ 0.9), gifti |
Published: | 2020-06-17 |
Author: | Tim Schäfer |
Maintainer: | Tim Schäfer <ts+code at rcmd.org> |
BugReports: | https://github.com/dfsp-spirit/freesurferformats/issues |
License: | MIT + file LICENSE |
URL: | https://github.com/dfsp-spirit/freesurferformats |
NeedsCompilation: | no |
CRAN checks: | freesurferformats results |
Reference manual: | freesurferformats.pdf |
Vignettes: |
Reading FreeSurfer neuroimaging data with freesurferformats Computing volume header data with freesurferformats Writing FreeSurfer neuroimaging data with freesurferformats |
Package source: | freesurferformats_0.1.11.tar.gz |
Windows binaries: | r-devel: freesurferformats_0.1.11.zip, r-release: freesurferformats_0.1.11.zip, r-oldrel: freesurferformats_0.1.11.zip |
macOS binaries: | r-release: freesurferformats_0.1.11.tgz, r-oldrel: freesurferformats_0.1.11.tgz |
Old sources: | freesurferformats archive |
Reverse imports: | fsbrain, threeBrain |
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