Model fluxes of carbon, nitrogen, and phosphorus with the use of a coupled bioenergetics and stoichiometric model that incorporates flexible elemental limitation. Additional functions to help the user to find parameters are included. Finally, functions to extract and visualize results are available as well. For an introduction, see vignette. For more information on the theoretical background of this model, see Schiettekatte et al. (2020) <doi:10.1111/1365-2435.13618>.
| Version: | 0.0.1.1 |
| Depends: | R (≥ 3.6.0) |
| Imports: | methods, Rcpp (≥ 0.12.0), RcppParallel (≥ 5.0.1), rstan (≥ 2.18.1), rstantools (≥ 2.0.0), parallel, dplyr, fishualize, ggplot2, plyr, rfishbase, tidybayes, tidyr |
| LinkingTo: | BH (≥ 1.66.0), Rcpp (≥ 0.12.0), RcppEigen (≥ 0.3.3.4.0), RcppParallel (≥ 5.0.1), rstan (≥ 2.18.1), StanHeaders (≥ 2.18.0) |
| Suggests: | knitr, rmarkdown, testthat, covr |
| Published: | 2020-07-08 |
| Author: | Nina M. D. Schiettekatte [aut, cre], Diego Barneche [aut] |
| Maintainer: | Nina M. D. Schiettekatte <nina.schiettekatte at gmail.com> |
| BugReports: | https://github.com/nschiett/fishflux/issues |
| License: | MIT + file LICENSE |
| URL: | https://nschiett.github.io/fishflux/ |
| NeedsCompilation: | yes |
| SystemRequirements: | GNU make |
| Citation: | fishflux citation info |
| Materials: | README |
| CRAN checks: | fishflux results |
| Reference manual: | fishflux.pdf |
| Vignettes: |
Intro to fishflux |
| Package source: | fishflux_0.0.1.1.tar.gz |
| Windows binaries: | r-devel: fishflux_0.0.1.1.zip, r-release: fishflux_0.0.1.1.zip, r-oldrel: fishflux_0.0.1.1.zip |
| macOS binaries: | r-release: fishflux_0.0.1.1.tgz, r-oldrel: fishflux_0.0.1.1.tgz |
| Old sources: | fishflux archive |
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