Compute Vorob’ev threshold, expectation and deviation. Plots of the symmetric deviation. (Mickael Binois)
Non-integer EAF percentiles are computed correctly. (Manuel López-Ibáñez)
Various aesthetic improvements in eafplot() and eafdiffplot(). (Manuel López-Ibáñez)
Functions for computing hypervolume, hypervolume contributions, epsilon metric, IGD+, filter dominated points, and fast normalisation of ranges. (Manuel López-Ibáñez)
Command-line tools for computing the above are installed in system.file(package="eaf", "bin/"). (Manuel López-Ibáñez)
Online documentation available at: http://lopez-ibanez.eu/eaftools (Manuel López-Ibáñez)
New read_datasets() replaces deprecated read.data.sets(). New parameter text of read_datasets(). (Manuel López-Ibáñez)
New eafdiff() function for computing EAF differences. (Manuel López-Ibáñez)
The data.frame method for eafplot has been removed. It had unexpected behavior and the default method handles data.frame already. (Manuel López-Ibáñez)
Python script to compute EAF differences installed at system.file(package="eaf", "scripts/eafdiff.py"). (Manuel López-Ibáñez)
Development version moved to GitHub: https://github.com/MLopez-Ibanez/eaf
Remove leading zeros from version number.
New parameters left.panel.last and right.panel.last of eafdiffplot().
Export and document function eafs() to compute EAFs.
eafdiff.pl: Handle --colors=, --intervals=.
Fix crash in eafplot() if sets is a vector of strings.
Reset layout in eafdiffplot().
Compute eaf for 3D.
Added testthat testing framework.
The documentation is now generated with Roxygen2.
Entry points to C code are now properly registered.
inst/scripts/eaf/Makefile.Fix bug when automatically generating a legend in eafplot with the formula interface (Thanks to Bernd Bischl for reporting this)
Improve handling of various newline character formats.
Reduce memory consumption (up to four times less memory).
eafdiff.pl: Mention option –legendpos=none to hide the legend.
eafplot.pl: Add options –maximise and –xmaximise and –colors=. Fix bug with –area.
eafplot.default() now requires two colors when type=="area" and a palette is interpolated between these two colors for all the different levels plotted (Thanks to Alexandre Quemy for the suggestion).
Implement type = "area") for eafdiffplot(). This is now the default.
The idea for the algorithm to compute the areas was provided by Carlos M. Fonseca. The implementation uses R polygons, which some PDF viewers may have trouble rendering correctly (See https://cran.r-project.org/doc/FAQ/R-FAQ.html#Why-are-there-unwanted-borders).
Plots will look correct when printed. To get the previous behavior use eafdiffplot(, type = "point").
Attempt to deal with DOS/Unix newlines correctly.
eafplot.pl: Lots of cleanup. (–single, –output, –legend): New options. Default to PDF.
eafdiff.pl: Many cleanups. EAF diff with type=“area” is the default now. Parameter –cex replaced by –scale. Do not require ps2eps. Handle –obj1= better. Crop pdf before converting to png. (–noattsurfs): New option. (–output-dir,–output): New options. (–eps): New option. PDF is the default now.
Force eafdiff plots to use a square plotting region.
read.data.sets() normalizes paths, thus it works with files such as ~/file.
Function eafdiffplot() handles percentiles=NA and grand.lines parameter.
Fix bug with ranges and maximise=TRUE in eafdiffplot().
Fix points.steps to work correctly for all values of maximise.
Fix bug in eafdiffplot(…, maximise=c(TRUE,FALSE), full.eaf = TRUE)
Fix “log” parameter in eafplot and eafdiffplot.
Avoid that eafplot.formula modifies global options.
Add ‘axes’ parameter to eafplot.
To avoid confusion, the arguments ‘xaxis.side’ and ‘yaxis.side’ of eafplot can only take values c(“below”, “above”) and c(“left”, “right”), respectively.
Add missing Makefile in inst/scripts/eaf/.
Handle maximise argument in eafdiffplot and –maximise command-line option in eafdiff.pl
R/calls.R (eafplot.data.frame): Fix problem with main parameter.