ctrdata 1.3.1.9001

• 2020-08-01

ctrdata 1.3.1

• 2020-08-01
• fix error in CI tests

ctrdata 1.3.0

• 2020-07-27
• workaround EUCTR certificate issue
• streamline ctrGetQueryUrlFromBrowser()
• better handling of complex fields
• include further tests for query string handling, checking more parameters and return values
• better clean-up after testing
• ctrLoadQueryIntoDb(querytorerun = …) now looks for the date when the querytorerun was last run, to more often use euctr update options
• switching from travis to github action
• upped coverage of code tested

ctrdata 1.2.1

• 2020-05-18
• tinytest >= 1.2.1 to avoid regression error
• correct testing detail

ctrdata 1.2

• 2019-12-07
• correct cygwin install detail

ctrdata 1.1

• 2019-11-12
• release after nodbi 0.4 is available

ctrdata 1.0.1.9005

• 2019-11-09
• update description for installation from github

ctrdata 1.0.1.9004

• 2019-11-04
• handled mixed arrays and text values in same key of ctgov trial records
• more user information during importing

ctrdata 1.0.1.9003

• 2019-11-04
• further nesting added for euctr trial records
• user verbose information extended for record importing

ctrdata 1.0.1.9002

• 2019-11-03
• improved parsing of euctr trial records
• correct re-opening of sqlite connection

ctrdata 1.0.1

• 2019-10-22
• correction of testing

ctrdata 1.0

• 2019-10-16
• switch to nodbi::scr_{mongo,sqlite}() with re-implementation of most functions
• switch from testthat to tinytest, so that users can check with tinytest::test_package(“ctrdata”)
• improvements to euctr trial import
  
• new function dfListExtractKey

ctrdata 0.18.9005

• 2019-05-02
• speed up testing bash commands under windows

ctrdata 0.18.2

• 2019-04-30
• new release
• extended compatibility with cygwin and Windows

ctrdata 0.18.9004

• 2019-04-28
• find and use any cygw* under windows
• refactored escaping bash command when called under windows

ctrdata 0.18.9002

• 2019-04-21
• corrected typing date fields

ctrdata 0.18.1

• 2019-04-14
• simplified cygwin install
• updated documentation
• corrected inconsistent handling of query terms

ctrdata 0.18.9001

• 2019-04-12
• added automated proxy handling

ctrdata 0.18

• 2019-04-11
• release version
• bug fixes in field typing
• move to use remote mongodb server
• updated vignettes

ctrdata 0.17

• 2019-03-27
• release version

ctrdata 0.16.9002

• 2019-03-26
• improve dbFindFields() formatting
• added parameter to force running a query again

ctrdata 0.16.9001

• 2019-03-26
• added further typing (some of the numeric fields)
• improve cygwin install attempts and information

ctrdata 0.16.9000

• 2019-03-24
• removed dependency on local mongodb installation (major rewrite)
• improved support for remote mongodb servers (note changes in host / db / uri parameters)

ctrdata 0.15.9007

• 2019-03-15
• Important: Added no checking of SSL certificates for EUCTR because the EUCTR server is not sending the required intermediate and root certificates, thus failing curl and httr, see https://www.digicert.com/help/?host=www.clinicaltrialsregister.eu

ctrdata 0.15.0

• 2019-03-13
• fixed EUCTR results retrieval (curl return value order not predictable)
• removed second time adding metadata in one function
• streamlined user information and progress feedback

ctrdata 0.14.3

• 2019-03-12
• turned error into message when no new trials are found
• prevent failing tests if no new trials found in rss feed

ctrdata 0.14.2

• 2019-03-07
• harmonise user information

ctrdata 0.14.1

• 2019-03-07
• replaced RCurl (which failed for some register servers) by httr and curl
• create README.md from README.Rmd

ctrdata 0.14

• 2019-03-06
• intention to submit to CRAN, therefore changing several warnings to messages, improve testing of tool chain applications

ctrdata 0.13.3

• 2019-03-03
• prettified dbFindFields() by removing count symbols (XX.) from paths
• improve converting of invalid XML from EUCTR result files to JSON

ctrdata 0.13.2

• 2019-02-28
• made EUCTR retrieval more robust
• added marginal case for url of single trial in EUCTR
• extended timeout for checking online status of EUCTR

ctrdata 0.13.1

• 2019-02-24
• added typing of dates and some logical fields when using dbGetFieldsIntoDf()

ctrdata 0.13

• 2019-01-06
• changes :
  • dbGetVariablesIntoDf() is deprecated, use dbGetFieldsIntoDf() instead
  • dbFindVariable() is deprecated, use dbFindFields() instead
  • in dbMergeTwoVariablesRelevel() parameter varnames is deprecated, use colnames instead

ctrdata 0.12.1

• 2018-12-15
• added function ctrFindActiveSubstanceSynonyms() to obtain synonyms for an active substance
• added user information on number of trials in CTGOV to be downloaded, and limit this to 5000 per query
• corrected import from EUCTR for details = FALSE

ctrdata 0.12

• 2018-05-19
• added possibility to add user’s annotations to records retrieved with a query (new option annotate.text)

ctrdata 0.11.2

• 2018-04-22
• changed queryterm processing

ctrdata 0.11.1

• 2018-04-07
• improved installFindMongoBinaries(), should now better detect mongo binary locations and use for example in cron scripts, which may not have access to a user’s path information

ctrdata 0.11

• 2018-01-28
• newly retrieved: EUCTR results history, into new fields “firstreceived_results_date” and “version_results_history”
• adding feature as per issue #8

ctrdata 0.10.4

• 2017-12-28
• note on compatibility with mongoDB versions
• fixing issue #8
• simplified license

ctrdata 0.10.3

• 2017-11-24
• changed custom-built “x5_trial_status” to “p_end_of_trial_status” provided by EUCTR

ctrdata 0.10.2

• 2017-11-22
• editorial project updates

ctrdata 0.10.1

• 2017-07-30
• now loading results from euctr where available as xml

ctrdata 0.10.0

• 2017-07-25
• fully load results from ctgov
• prepare loading results from euctr

ctrdata 0.9.14

• 2017-06-28
• refactored system calls
• windows now part of continuous integration

ctrdata 0.9.13

• 2017-06-23
• refactored ctrLoadQueryIntoDb

ctrdata 0.9.12

• 2017-06-18
• Preparing for new CTGOV interface
• Improved documentation
• Corrected ctrGetQueryUrlFromBrowser return value

ctrdata 0.9.11.1

• 2017-02-04
• Improved documentation

ctrdata 0.9.11

• 2017-01-15
• Added functionality: EUCTR fallback import mechanism if large JSON file fails to import into mongoDB (by splitting and importing one JSON file for each trial, tested with several thousand trials)

ctrdata 0.9.10.1

• 2017-01-12
• Fixes issues with conversion of EUCTR records that did not have details.
• Fixes issue that placebo information was converted into IMP fields.

ctrdata 0.9.10.0

• 2016-12-28
• Added metadata attributes to returned objects to indicate database, query, timestamp etc.

ctrdata 0.9.9.5

• 2016-12-14
• Added option ctrLoadQueryIntoDb(querytoupdate = “last”) to re-download last query in collection

ctrdata 0.9.9.4

• 2016-11-18
• Added progress indicator to ctrLoadQueryIntoDb() to indicate network download traffic

ctrdata 0.9.9.3

• 2016-11-17
• deduplication in dbFindIdsUniqueTrials() optimised for speed and memory, added check by ISRCTN

ctrdata 0.9.9.2

• 2016-11-13
• corrected deduplication in dbFindIdsUniqueTrials()

ctrdata 0.9.9.1

• 2016-11-12
• renamed ctrQueryHistoryInDb() to dbQueryHistory()
• note: change in json format of query history, breaking compatibility
• refactored all concerned functions to use mongolite
• rmongodb is no more supported

ctrdata 0.9

• 2016-10-17
• changed implementation of dbFindIdsUniqueTrials()
• editorial changes to examples

ctrdata 0.8.1

• 2016-09-07
• added field to indicate source register
• improved ctrLoadQueryIntoDb() with details = FALSE
• added example for map plotting

ctrdata 0.8

• 2016-09-04
• dbFindIdsUniqueTrials now encapsulates dfFindIdsUniqueEuctrRecord
• dfFindIdsUniqueEuctrRecords removed
• installation instructions updated after recently rmongodb was removed from CRAN

ctrdata 0.7

• 2016-05-29
• dbGetVariablesIntoDf changed to concatenate values in array and objects
• completed test adaptation for travis
• improving perl regex
• checking helper applications

ctrdata 0.6.2

• 2016-04-20
• add / update field “record_last_import” for every imported / updated record

ctrdata 0.6.1

• 2016-04-02
• changed to provide vignettes

ctrdata 0.6

• 2016-02-25
• different update mechanism for EUCTR implemented
• corrected function name from db… to dfFindUniqueEuctrRecord()

ctrdata 0.5.9

• 2016-01-23
• Corrected bugs
• Started preparation of submission to CRAN
• Preparing to include package unit tests

ctrdata 0.5

• 2015-11-29
• Published on github
• Improved documentation

ctrdata 0.4

• 2015-10-08
• Renamed all functions for consistency and ease-of-use

ctrdata 0.3

• 2015-10-06
• Added functionality to download xml data from CTGOV, which includes more data than the csv format

ctrdata 0.2.8

• Changed and extended how history of queries is included in database.
• New function dbCTRQueryHistory()

ctrdata 0.2.7

• Added function for merging variables such as from different registers and optionally to merge values into new values
• Note that function findCTRkey was renamed to dbFindCTRkey because it acts on the database

ctrdata 0.2.5

• Added function for selecting preferred language versions of trials from EUCTR
• Improved use of automatic proxy configuration script

ctrdata 0.2.2

• Added proxy function and improved installation of cygwin under MS Windows

ctrdata 0.2

• 2015-09-19
• Now also working on MS Windows

ctrdata 0.1

• 2015-09-15
• First version with basic functionality
• Limited testing
• Works on Mac OS X (10.10.x)