An algorithm for identifying combinations of mutually exclusive alterations in cancer genomes. CoMEt represents the mutations in a set M of k genes with a 2^k dimensional contingency table, and then computes the tail probability of observing T(M) exclusive alterations using an exact statistical test.
| Version: | 0.1.5 |
| Depends: | R (≥ 3.4.0) |
| Imports: | dplyr |
| Published: | 2018-01-29 |
| Author: | Max Leiserson [aut, cre], Hsin-Ta Wu [aut], Fabio Vandin [ctb], Vivian Hsiao [ctb], Benjamin Raphael [ctb] |
| Maintainer: | Max Leiserson <mdml at cs.umd.edu> |
| License: | MIT + file LICENSE |
| URL: | http://compbio.cs.brown.edu/projects/comet, https://www.r-project.org |
| NeedsCompilation: | yes |
| Citation: | cometExactTest citation info |
| CRAN checks: | cometExactTest results |
| Reference manual: | cometExactTest.pdf |
| Package source: | cometExactTest_0.1.5.tar.gz |
| Windows binaries: | r-devel: cometExactTest_0.1.5.zip, r-release: cometExactTest_0.1.5.zip, r-oldrel: cometExactTest_0.1.5.zip |
| macOS binaries: | r-release: cometExactTest_0.1.5.tgz, r-oldrel: cometExactTest_0.1.5.tgz |
| Old sources: | cometExactTest archive |
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