Easy-to-use, efficient, flexible and scalable tools for analyzing massive SNP arrays <doi:10.1093/bioinformatics/bty185>.
| Version: | 1.4.4 |
| Depends: | R (≥ 3.3), bigstatsr (≥ 1.2.2) |
| Imports: | bigassertr (≥ 0.1.3), bigparallelr, bigsparser (≥ 0.2.3), bigreadr, bigutilsr (≥ 0.3), data.table, foreach, ggplot2, magrittr, Matrix, methods, Rcpp, stats |
| LinkingTo: | bigsparser, bigstatsr, Rcpp, RcppArmadillo (≥ 0.9.600), rmio |
| Suggests: | bindata, covr, dbplyr (≥ 1.4), dplyr, gaston, glue, Hmisc, pcadapt (≥ 4.1), rmutil, RSpectra, RSQLite, R.utils, spelling, testthat, xgboost |
| Published: | 2020-07-05 |
| Author: | Florian Privé [aut, cre], Michael Blum [ths], Hugues Aschard [ths] |
| Maintainer: | Florian Privé <florian.prive.21 at gmail.com> |
| BugReports: | https://github.com/privefl/bigsnpr/issues |
| License: | GPL-3 |
| URL: | https://privefl.github.io/bigsnpr |
| NeedsCompilation: | yes |
| SystemRequirements: | Package 'bigsnpr' includes a few functions that wrap existing software such as 'PLINK' <www.cog-genomics.org/plink2>. Functions are provided to download these software. Note that these external software might not work for some operating systems (e.g. 'PLINK' might not work on Solaris). |
| Language: | en-US |
| Citation: | bigsnpr citation info |
| Materials: | README NEWS |
| CRAN checks: | bigsnpr results |
| Reference manual: | bigsnpr.pdf |
| Package source: | bigsnpr_1.4.4.tar.gz |
| Windows binaries: | r-devel: bigsnpr_1.4.4.zip, r-release: bigsnpr_1.4.4.zip, r-oldrel: bigsnpr_1.4.4.zip |
| macOS binaries: | r-release: bigsnpr_1.4.4.tgz, r-oldrel: bigsnpr_1.4.4.tgz |
| Old sources: | bigsnpr archive |
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