[aut, cre, cph],
Emmanuel Paradis
[cph],
Klaus Schliep
[cph]Efficient implementations of functions for the creation, modification and analysis of phylogenetic trees. Applications include: generation of trees with specified shapes; rooting of trees and extraction of subtrees; calculation and depiction of node support; calculation of ancestor-descendant relationships; import and export of trees from Newick, Nexus (Maddison et al. 1997) <doi:10.1093/sysbio/46.4.590>, and TNT <http://www.lillo.org.ar/phylogeny/tnt/> formats; and analysis of splits and cladistic information.
| Version: | 1.2.0 |
| Depends: | R (≥ 3.4.0), ape (≥ 5.0) |
| Imports: | bit64, colorspace, phangorn (≥ 2.2.1), R.cache |
| LinkingTo: | Rcpp |
| Suggests: | knitr, Rcpp, Rdpack, rmarkdown, shiny, testthat |
| Published: | 2020-08-03 |
| Author: | Martin R. Smith
[aut, cre, cph],
Emmanuel Paradis
[cph],
Klaus Schliep
[cph] |
| Maintainer: | Martin R. Smith <martin.smith at durham.ac.uk> |
| BugReports: | https://github.com/ms609/TreeTools/issues/ |
| License: | GPL (≥ 3) |
| Copyright: | Incorporates C/C++ code from: ape by Emmanuel Paradis; phangorn by Klaus Scheip <doi:10.1093/bioinformatics/btq706> |
| URL: | https://ms609.github.io/TreeTools/, https://github.com/ms609/TreeTools/ |
| NeedsCompilation: | yes |
| SystemRequirements: | C++11 |
| Language: | en-GB |
| Citation: | TreeTools citation info |
| Materials: | NEWS |
| CRAN checks: | TreeTools results |
| Reference manual: | TreeTools.pdf |
| Vignettes: |
Navigating the file system in R Load phylogenetic data Load phylogenetic trees |
| Package source: | TreeTools_1.2.0.tar.gz |
| Windows binaries: | r-devel: TreeTools_1.2.0.zip, r-release: TreeTools_1.2.0.zip, r-oldrel: TreeTools_1.2.0.zip |
| macOS binaries: | r-release: TreeTools_1.2.0.tgz, r-oldrel: TreeTools_1.2.0.tgz |
| Old sources: | TreeTools archive |
| Reverse imports: | Quartet, TBRDist, TreeDist, TreeSearch |
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