Assists performing tip-dating of phylogenetic trees with BEAST BEAST is a popular software for phylogenetic analysis. The package assists the implementation of various phylogenetic tip- dating tests using BEAST. It contains two main functions. The first one allows preparing date randomization analyses, which assess the temporal signal of a data set. The second function allows performing leave-one-out analyses, which test for the consistency between independent calibration sequences and allow pinpointing those leading to potential bias. The included tutorial provides detailed step-by-step instructions. An expanded description of the package can be found in article: Rieux, A. and Khatchikian, C.E. (2017), TIPDATINGBEAST: an R package to assist the implementation of phylogenetic tip-dating tests using BEAST. Molecular Ecology Resources, 17: 608-613. <onlinelibrary.wiley.com/doi/full/10.1111/1755-0998.12603>.
| Version: | 1.1-0 |
| Depends: | R (≥ 3.1.2) |
| Imports: | mclust, TeachingDemos, DescTools, utils, stats |
| Published: | 2019-10-22 |
| Author: | Adrien Rieux, Camilo Khatchikian |
| Maintainer: | Camilo Khatchikian <ckhatchikian at gmail.com> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| URL: | https://www.r-project.org |
| NeedsCompilation: | no |
| CRAN checks: | TipDatingBeast results |
| Reference manual: | TipDatingBeast.pdf |
| Package source: | TipDatingBeast_1.1-0.tar.gz |
| Windows binaries: | r-devel: TipDatingBeast_1.1-0.zip, r-release: TipDatingBeast_1.1-0.zip, r-oldrel: TipDatingBeast_1.1-0.zip |
| macOS binaries: | r-release: TipDatingBeast_1.1-0.tgz, r-oldrel: TipDatingBeast_1.1-0.tgz |
| Old sources: | TipDatingBeast archive |
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