TFMPvalue: Efficient and Accurate P-Value Computation for Position Weight Matrices

In putative Transcription Factor Binding Sites (TFBSs) identification from sequence/alignments, we are interested in the significance of certain match score. TFMPvalue provides the accurate calculation of P-value with score threshold for Position Weight Matrices, or the score with given P-value. It is an interface to code originally made available by Helene Touzet and Jean-Stephane Varre, 2007, Algorithms Mol Biol:2, 15. Touzet and Varre (2007) <doi:10.1186/1748-7188-2-15>.

Version: 0.0.8
Depends: R (≥ 3.0.1)
Imports: Rcpp (≥ 0.11.1)
LinkingTo: Rcpp
Suggests: testthat
Published: 2018-05-16
Author: Ge Tan
Maintainer: Ge Tan <ge_tan at live.com>
BugReports: https://github.com/ge11232002/TFMPvalue/issues
License: GPL-2
Copyright: 2007 LIFL-USTL-INRIA
URL: https://github.com/ge11232002/TFMPvalue
NeedsCompilation: yes
SystemRequirements: C++11
CRAN checks: TFMPvalue results

Downloads:

Reference manual: TFMPvalue.pdf
Package source: TFMPvalue_0.0.8.tar.gz
Windows binaries: r-devel: TFMPvalue_0.0.8.zip, r-release: TFMPvalue_0.0.8.zip, r-oldrel: TFMPvalue_0.0.8.zip
macOS binaries: r-release: TFMPvalue_0.0.8.tgz, r-oldrel: TFMPvalue_0.0.8.tgz
Old sources: TFMPvalue archive

Reverse dependencies:

Reverse imports: motifbreakR, TFBSTools, transite

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