Function Wrapper contains four algorithms for developing threshold-based multivariate (prognostic/predictive) biomarker signatures via bootstrapping and aggregating of thresholds from trees, Monte-Carlo variations of the Adaptive Indexing method and Patient Rule Induction Method. Variable selection is automatically built-in to these algorithms. Final signatures are returned with interaction plots for predictive signatures. Cross-validation performance evaluation and testing dataset results are also output.
| Version: | 0.11 |
| Depends: | R (≥ 2.1.0), AIM, survival, ggplot2, Matrix |
| Imports: | rpart, stats, glmnet |
| Published: | 2017-03-04 |
| Author: | Xin Huang, Yan Sun, Saptarshi Chatterjee and Paul Trow |
| Maintainer: | Xin Huang <xhuang.stats at gmail.com> |
| License: | GPL-3 |
| NeedsCompilation: | no |
| Citation: | SubgrpID citation info |
| Materials: | NEWS |
| CRAN checks: | SubgrpID results |
| Reference manual: | SubgrpID.pdf |
| Package source: | SubgrpID_0.11.tar.gz |
| Windows binaries: | r-devel: SubgrpID_0.11.zip, r-release: SubgrpID_0.11.zip, r-oldrel: SubgrpID_0.11.zip |
| macOS binaries: | r-release: SubgrpID_0.11.tgz, r-oldrel: SubgrpID_0.11.tgz |
| Old sources: | SubgrpID archive |
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