To cite Rphylip in publication use:

Revell, L. J., & Chamberlain, S. A. Rphylip: An R interface for PHYLIP R package.

As Rphylip is an R interface for PHYLIP, all Rphylip users should cite PHYLIP in published work: Felsenstein, J. (2013) PHYLIP (Phylogeny Inference Package) version 3.695. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle. We also have an article in review describing this package: Revell, L. J., & Chamberlain, S. A. Rphylip: An R interface for PHYLIP. In review at Methods Ecol. Evol.

Corresponding BibTeX entry:

  @Manual{,
    title = {Rphylip: An R interface for PHYLIP.},
    author = {Liam J. Revell & Scott A. Chamberlain},
    year = {2013},
    url = {http://www.phytools.org/Rphylip},
  }