To cite RRphylo, search.shift, search.trend and auxilliary functions in publications use:

RRphylo package, search.shift, and auxilliary functions

Castiglione S, Tesone G, Piccolo M, Melchionna M, Mondanaro A, Serio C, Febbraro MD, Raia P (2018). “A new method for testing evolutionary rate variation and shifts in phenotypic evolution.” Methods in Ecology and Evolution, 9, 974-983. https://besjournals.onlinelibrary.wiley.com/doi/full/10.1111/2041-210X.12954.

search.trend

Castiglione S, Serio C, Mondanaro A, Febbraro MD, Profico A, Girardi G, Raia P (2019). “Simultaneous detection of macroevolutionary patterns in phenotypic means and rate of change with and within phylogenetic trees including extinct species.” PLoS ONE, 14, e0210101. https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0210101.

multiple regression version of RRphylo

Serio C, Castiglione S, Tesone G, Piccolo M, Melchionna M, Mondanaro A, Febbraro MD, Raia P (2019). “Macroevolution of toothed whales exceptional relative brain size.” Evolutionary Biology, 46, 332-342. https://link.springer.com/article/10.1007/s11692-019-09485-7.

Melchionna M, Mondanaro A, Serio C, Castiglione S, Febbraro MD, Rook L, Diniz-Filho JA, Manzi G, Profico A, Sansalone G, Raia P (2020). “Macroevolutionary trends of brain mass in Primates.” Biological Journal of the Linnean Society. https://academic.oup.com/biolinnean/advance-article/doi/10.1093/biolinnean/blz161/5614248.

search.conv

Castiglione S, Serio C, Tamagnini D, Melchionna M, Mondanaro A, Febbraro MD, Profico A, Piras P, Barattolo F, Raia P (2019). “A new, fast method to search for morphological convergence with shape data.” PLoS ONE, 14, e0226949. https://doi.org/10.1371/journal.pone.0226949.

Corresponding BibTeX entries:

  @Article{,
    title = {A new method for testing evolutionary rate variation and
      shifts in phenotypic evolution.},
    author = {Silvia Castiglione and Gianmarco Tesone and Martina
      Piccolo and Marina Melchionna and Alessandro Mondanaro and
      Carmela Serio and Mirko Di Febbraro and Pasquale Raia},
    journal = {Methods in Ecology and Evolution},
    year = {2018},
    volume = {9},
    pages = {974-983},
    url =
      {https://besjournals.onlinelibrary.wiley.com/doi/full/10.1111/2041-210X.12954},
  }

  @Article{,
    title = {Simultaneous detection of macroevolutionary patterns in
      phenotypic means and rate of change with and within phylogenetic
      trees including extinct species.},
    author = {Silvia Castiglione and Carmela Serio and Alessandro
      Mondanaro and Mirko Di Febbraro and Antponio Profico and Giorgia
      Girardi and Pasquale Raia},
    journal = {PLoS ONE},
    year = {2019},
    volume = {14},
    pages = {e0210101},
    url =
      {https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0210101},
  }

  @Article{,
    title = {Macroevolution of toothed whales exceptional relative
      brain size.},
    author = {Carmela Serio and Silvia Castiglione and Gianmarco Tesone
      and Martina Piccolo and Marina Melchionna and Alessandro
      Mondanaro and Mirko Di Febbraro and Pasquale Raia},
    journal = {Evolutionary Biology},
    year = {2019},
    volume = {46},
    pages = {332-342},
    url =
      {https://link.springer.com/article/10.1007/s11692-019-09485-7},
  }

  @Article{,
    title = {Macroevolutionary trends of brain mass in Primates.},
    author = {Marina Melchionna and Alessandro Mondanaro and Carmela
      Serio and Silvia Castiglione and Mirko Di Febbraro and Lorenzo
      Rook and José Alexandre Diniz-Filho and Giorgio Manzi and Antonio
      Profico and Gabriele Sansalone and Pasquale Raia},
    journal = {Biological Journal of the Linnean Society},
    year = {2020},
    url =
      {https://academic.oup.com/biolinnean/advance-article/doi/10.1093/biolinnean/blz161/5614248},
  }

  @Article{,
    title = {A new, fast method to search for morphological convergence
      with shape data.},
    author = {Silvia Castiglione and Carmela Serio and Davide Tamagnini
      and Marina Melchionna and Alessandro Mondanaro and Mirko Di
      Febbraro and Antonio Profico and Paolo Piras and Filippo
      Barattolo and Pasquale Raia},
    journal = {PLoS ONE},
    year = {2019},
    volume = {14},
    pages = {e0226949},
    url = {https://doi.org/10.1371/journal.pone.0226949},
  }