R version of 'GenClone' (a computer program to analyse genotypic data, test for clonality and describe spatial clonal organization, Arnaud-Haond & Belkhir 2007, <http://wwz.ifremer.fr/clonix/content/download/68205/903914/file/GenClone2.0.setup.zip>), this package allows clone handling as 'GenClone' does, plus the possibility to work with several populations, MultiLocus Lineages (MLL) custom definition and use, and p-value calculation for psex statistic (probability of originating from distinct sexual events) and psex_Fis statistic (taking account of Hardy-Weinberg equilibrium departure) as 'MLGsim'/'MLGsim2' (a program for detecting clones using a simulation approach, Stenberg et al. 2003).
| Version: | 1.0.2 |
| Depends: | R (≥ 3.2.0), graphics, stats, grDevices, utils, datasets, methods |
| Suggests: | knitr, pander, testthat |
| Published: | 2016-06-06 |
| Author: | Sophie Arnaud-Haond [aut], Diane Bailleul [aut, cre], Solenn Stoeckel [ctb] |
| Maintainer: | Diane Bailleul <diane.bailleul.pro at gmail.com> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2.0)] |
| URL: | https://github.com/dbailleul/RClone |
| NeedsCompilation: | no |
| Materials: | README |
| CRAN checks: | RClone results |
| Reference manual: | RClone.pdf |
| Vignettes: |
RClone part 2 RClone part 1 |
| Package source: | RClone_1.0.2.tar.gz |
| Windows binaries: | r-devel: RClone_1.0.2.zip, r-release: RClone_1.0.2.zip, r-oldrel: RClone_1.0.2.zip |
| macOS binaries: | r-release: RClone_1.0.2.tgz, r-oldrel: RClone_1.0.2.tgz |
| Old sources: | RClone archive |
| Reverse suggests: | poppr |
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