The main attribute of 'PopVar' is the prediction of genetic variance in bi-parental populations, from which the package derives its name. 'PopVar' contains a set of functions that use phenotypic and genotypic data from a set of candidate parents to 1) predict the mean, genetic variance, and superior progeny value of all, or a defined set of pairwise bi-parental crosses, and 2) perform cross-validation to estimate genome-wide prediction accuracy of multiple statistical models. More details are available in Mohammadi, Tiede, and Smith (2015). Crop Sci. doi:10.2135/cropsci2015.01.0030. A dataset 'think_barley.rda' is included for reference and examples.
| Version: | 1.2.1 |
| Depends: | R (≥ 3.1.1) |
| Imports: | BGLR, qtl, rrBLUP, stats, utils |
| Published: | 2015-07-08 |
| Author: | Tyler Tiede [aut, cre], Mohsen Mohammadi [ctb], Kevin P. Smith [ctb] |
| Maintainer: | Tyler Tiede <tyler.tiede7 at gmail.com> |
| License: | GPL-3 |
| NeedsCompilation: | no |
| CRAN checks: | PopVar results |
| Reference manual: | PopVar.pdf |
| Package source: | PopVar_1.2.1.tar.gz |
| Windows binaries: | r-devel: PopVar_1.2.1.zip, r-release: PopVar_1.2.1.zip, r-oldrel: PopVar_1.2.1.zip |
| macOS binaries: | r-release: PopVar_1.2.1.tgz, r-oldrel: PopVar_1.2.1.tgz |
| Old sources: | PopVar archive |
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