Returns almost all features that has been extracted from Position Specific Scoring Matrix (PSSM) so far, which is a matrix of L rows (L is protein length) and 20 columns produced by 'PSI-BLAST' which is a program to produce PSSM Matrix from multiple sequence alignment of proteins see <https://www.ncbi.nlm.nih.gov/books/NBK2590/> for mor details. some of these features are described in Zahiri, J., et al.(2013) <doi:10.1016/j.ygeno.2013.05.006>, Saini, H., et al.(2016) <doi:10.17706/jsw.11.8.756-767>, Ding, S., et al.(2014) <doi:10.1016/j.biochi.2013.09.013>, Cheng, C.W., et al.(2008) <doi:10.1186/1471-2105-9-S12-S6>, Juan, E.Y., et al.(2009) <doi:10.1109/CISIS.2009.194>.
| Version: | 0.1.0 |
| Depends: | R (≥ 3.1.0) |
| Imports: | utils, entropy, infotheo, phonTools, dtt |
| Suggests: | testthat, spelling, waveslim |
| Published: | 2020-05-08 |
| Author: | Alireza Mohammadi |
| Maintainer: | Alireza mohammadi <alireza691111 at gmail.com> |
| BugReports: | https://github.com/Alireza9651501005/PSSMCOOL/issues |
| License: | GPL-3 |
| URL: | http://possum.erc.monash.edu/help.jsp, https://github.com/Alireza9651501005/PSSMCOOL |
| NeedsCompilation: | no |
| Language: | en-US |
| Materials: | README |
| CRAN checks: | PSSMCOOL results |
| Reference manual: | PSSMCOOL.pdf |
| Package source: | PSSMCOOL_0.1.0.tar.gz |
| Windows binaries: | r-devel: PSSMCOOL_0.1.0.zip, r-release: PSSMCOOL_0.1.0.zip, r-oldrel: PSSMCOOL_0.1.0.zip |
| macOS binaries: | r-release: PSSMCOOL_0.1.0.tgz, r-oldrel: PSSMCOOL_0.1.0.tgz |
Please use the canonical form https://CRAN.R-project.org/package=PSSMCOOL to link to this page.