Segmentation of allele-specific DNA copy number data and detection of regions with abnormal copy number within each parental chromosome. Both tumor-normal paired and tumor-only analyses are supported.
| Version: | 0.65.0 |
| Depends: | R (≥ 3.2.0), utils |
| Imports: | R.methodsS3 (≥ 1.7.1), R.oo (≥ 1.22.0), R.utils (≥ 2.8.0), R.cache (≥ 0.13.0), matrixStats (≥ 0.54.0), aroma.light (≥ 2.4.0), DNAcopy (≥ 1.42.0), listenv (≥ 0.7.0), future (≥ 1.12.0), parallel |
| Suggests: | Hmisc (≥ 4.2-0), R.rsp (≥ 0.43.1), R.devices (≥ 2.16.0), ggplot2 (≥ 3.1.1) |
| Published: | 2019-05-05 |
| Author: | Henrik Bengtsson [aut, cre, cph], Pierre Neuvial [aut], Venkatraman E. Seshan [aut], Adam B. Olshen [aut], Paul T. Spellman [aut], Richard A. Olshen [aut] |
| Maintainer: | Henrik Bengtsson <henrikb at braju.com> |
| BugReports: | https://github.com/HenrikBengtsson/PSCBS/issues |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| URL: | https://github.com/HenrikBengtsson/PSCBS |
| NeedsCompilation: | no |
| Citation: | PSCBS citation info |
| Materials: | NEWS |
| CRAN checks: | PSCBS results |
| Reference manual: | PSCBS.pdf |
| Vignettes: |
Total copy-number segmentation using CBS Parent-specific copy-number segmentation using Paired PSCBS |
| Package source: | PSCBS_0.65.0.tar.gz |
| Windows binaries: | r-devel: PSCBS_0.65.0.zip, r-release: PSCBS_0.65.0.zip, r-oldrel: PSCBS_0.65.0.zip |
| macOS binaries: | r-release: PSCBS_0.65.0.tgz, r-oldrel: PSCBS_0.65.0.tgz |
| Old sources: | PSCBS archive |
| Reverse imports: | aroma.cn, aroma.core, EstMix |
| Reverse suggests: | jointseg, PureCN |
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