PLNmodels 0.10.6
- Correction in likelihood of diagonal PLN
- amending test-pln to fullfil CRAN request (error on ATLAS variant of BLAS…)
PLNmodels 0.10.5
- Refactor code of R6 classes to benefit from Roxygen 7.0.0 R6-related new features for documentation
PLNmodels 0.10.4
- Change name of variational variance parameters to S2 (used to be S)
- use spell_check to check spelling, found many typos
PLNmodels 0.10.3
- Change in optimization for all PLN models (PLNs, PCA, LDA, networks): solving in S such that S = S² for the variational parameters, thus avoiding lower bound and constrained optimization. Slightly finer results/estimations for similar computational cost, but easier to maintain.
PLNmodels 0.10.2
- Fix bug in predict() methods when factor levels differ between train and test datasets.
- Fix bug in PLNPCAfit S3 plot() method
- Some simplification in C++ code
- correction/changes in PLN likelihoods? + added constant terms in all likelihoods of all PLN models
- VEstep now available for all model of covariance in PLN (full, diagonal, spherical)
PLNmodels 0.9.5 - minor release
- removed any use of rmarkdown::paged_table() in the vignettes
- added screenshot.force = FALSE, in knitr options in the vignettes
PLNmodels 0.9.4 - minor release
- removing dependencies to bioconductor packages, too cumbersome to maintain on CRAN
PLNmodels 0.9.3 - minor release
- correction in test to comply new class of matrix object
PLNmodels 0.9.2.9002 - development version
- added the possibility for matrix of weights for the penalty in PLNnetworks
PLNmodels 0.9.2
PLNmodels 0.9.1
- Use nloptr to prepare CRAN release
PLNmodels 0.8.2
PLNmodels 0.8.1
- Preparing first CRAN release
PLNmodels 0.7.0.1
- Added a
NEWS.md
file to track changes to the package.