MultiSV is an R package for identification of structural variations in multiple populations based on whole genome resequencing. It fits linear mixed model and identifies structural variations in multiple populations using whole genome sequencing data. It could also be manipulated to use on RNA-seq data for differential gene expression (implementation in future releases). Main steps for analysis include generating read depth in bins using ComputeBinCounts. conversion of bins to MultiSV format using Bin2MultiSV. Finally, identification of structural variations using CallMultiSV.
| Version: | 0.0-67 |
| Depends: | R (≥ 2.10) |
| Imports: | nlme, reshape |
| Published: | 2014-08-27 |
| Author: | Khurram Maqbool |
| Maintainer: | Khurram Maqbool <khurram.maqbool at outlook.com> |
| License: | LGPL (≥ 3) |
| NeedsCompilation: | no |
| Citation: | MultiSV citation info |
| CRAN checks: | MultiSV results |
| Reference manual: | MultiSV.pdf |
| Package source: | MultiSV_0.0-67.tar.gz |
| Windows binaries: | r-devel: MultiSV_0.0-67.zip, r-release: MultiSV_0.0-67.zip, r-oldrel: MultiSV_0.0-67.zip |
| macOS binaries: | r-release: MultiSV_0.0-67.tgz, r-oldrel: MultiSV_0.0-67.tgz |
| Old sources: | MultiSV archive |
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