This package contains the functions necessary to run the LOGICOIL algorithm. LOGICOIL can be used to differentiate between antiparallel dimers, parallel dimers, trimers and higher-order coiled-coil sequence. By covering >90 percent of the known coiled-coil structures, LOGICOIL is a net improvement compared with other existing methods, which achieve a predictive coverage of around 31 percent of this population. As such, LOGICOIL is particularly useful for researchers looking to characterize novel coiled-coil sequences or studying coiled-coil containing protein assemblies. It may also be used to assist in the structural characterization of synthetic coiled-coil sequences.
| Version: | 0.99.0 |
| Depends: | R (≥ 2.12), nnet |
| Published: | 2014-04-14 |
| Author: | Thomas L. Vincent, Peter J. Green and Derek N. Woolfson |
| Maintainer: | Thomas L. Vincent <tlfvincent at gmail.com> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| URL: | http://coiledcoils.chm.bris.ac.uk/LOGICOIL |
| NeedsCompilation: | no |
| CRAN checks: | LOGICOIL results |
| Reference manual: | LOGICOIL.pdf |
| Package source: | LOGICOIL_0.99.0.tar.gz |
| Windows binaries: | r-devel: LOGICOIL_0.99.0.zip, r-release: LOGICOIL_0.99.0.zip, r-oldrel: LOGICOIL_0.99.0.zip |
| macOS binaries: | r-release: LOGICOIL_0.99.0.tgz, r-oldrel: LOGICOIL_0.99.0.tgz |
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