Performs mQTL (methylation quantitative-trait locus) mapping in bisulfite sequencing studies by fitting a binomial mixed model and then incorporating the allelic-specific methylation pattern. Based on Fan, Yue; Vilgalys, Tauras P.; Sun, Shiquan; Peng, Qinke; Tung, Jenny; Zhou, Xiang (2019) <doi:10.1101/615039>.
| Version: | 1.0 |
| Depends: | R (≥ 3.5.0) |
| Imports: | Rcpp (≥ 0.12.19), foreach, doParallel, parallel, Matrix |
| LinkingTo: | Rcpp, RcppArmadillo |
| Published: | 2019-07-28 |
| Author: | Xiang Zhou [aut], Shiquan Sun [aut], Yue Fan [aut], Michael Kleinsasser [cre] |
| Maintainer: | Michael Kleinsasser <mkleinsa at umich.edu> |
| BugReports: | https://github.com/umich-biostatistics/IMAGE/issues |
| License: | GPL-2 |
| NeedsCompilation: | yes |
| Materials: | README |
| CRAN checks: | IMAGE results |
| Reference manual: | IMAGE.pdf |
| Package source: | IMAGE_1.0.tar.gz |
| Windows binaries: | r-devel: IMAGE_1.0.zip, r-release: IMAGE_1.0.zip, r-oldrel: IMAGE_1.0.zip |
| macOS binaries: | r-release: IMAGE_1.0.tgz, r-oldrel: IMAGE_1.0.tgz |
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