The package provides a set of functions whose aim is to propose 4 methods of QTL detection. HAPimLD is an interval-mapping method designed for unrelated individuals with no family information that makes use of linkage disequilibrium. HAPimLDL is an interval-mapping method for design of half-sib families. It combines linkage analysis and linkage disequilibrium. HaploMax is based on an analysis of variance with a dose haplotype effect. HaploMaxHS is based on an analysis of variance with a sire effect and a dose haplotype effect in half-sib family design. Fundings for the package development were provided to the LDLmapQTL project by the ANR GENANIMAL program and APIS-GENE.
| Version: | 1.3 |
| Published: | 2012-10-29 |
| Author: | S. Dejean, N. Oumouhou, D. Estivals, B. Mangin |
| Maintainer: | Brigitte Mangin <brigitte.mangin at toulouse.inra.fr> |
| License: | GPL-2 | GPL-3 [expanded from: GPL] |
| NeedsCompilation: | no |
| CRAN checks: | HAPim results |
| Reference manual: | HAPim.pdf |
| Package source: | HAPim_1.3.tar.gz |
| Windows binaries: | r-devel: HAPim_1.3.zip, r-release: HAPim_1.3.zip, r-oldrel: HAPim_1.3.zip |
| macOS binaries: | r-release: HAPim_1.3.tgz, r-oldrel: HAPim_1.3.tgz |
| Old sources: | HAPim archive |
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