Performs iterative extrapolation of species' haplotype accumulation curves using a nonparametric stochastic (Monte Carlo) optimization method for assessment of specimen sampling completeness based on the approach of Phillips et al. (2015) <doi:10.1515/dna-2015-0008>, Phillips et al. (2019) <doi:10.1002/ece3.4757> and Phillips et al. (2020) <doi:10.7717/peerj-cs.243>. Any genomic marker can be targeted to assess likely required specimen sample sizes. The method is well-suited to assess sampling sufficiency for DNA barcoding initiatives.
| Version: | 1.0.5 |
| Imports: | ape (≥ 5.2), graphics (≥ 3.5.1), pegas (≥ 0.11), Rcpp (≥ 1.0.0), stats (≥ 3.5.1), utils (≥ 3.5.1) |
| LinkingTo: | Rcpp, RcppArmadillo |
| Published: | 2020-01-07 |
| Author: | Jarrett D. Phillips [aut, cre], Steven H. French [ctb] |
| Maintainer: | Jarrett D. Phillips <phillipsjarrett1 at gmail.com> |
| License: | GPL-3 |
| NeedsCompilation: | yes |
| CRAN checks: | HACSim results |
| Reference manual: | HACSim.pdf |
| Package source: | HACSim_1.0.5.tar.gz |
| Windows binaries: | r-devel: HACSim_1.0.5.zip, r-release: HACSim_1.0.5.zip, r-oldrel: HACSim_1.0.5.zip |
| macOS binaries: | r-release: HACSim_1.0.5.tgz, r-oldrel: HACSim_1.0.5.tgz |
| Old sources: | HACSim archive |
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