The underlying methodology papers can be cited as:

Hande Topa, Agnes Jonas, Robert Kofler, Carolin Kosiol, Antti Honkela. Gaussian process test for high-throughput sequencing time series: application to experimental evolution. Bioinformatics 31(11):1762-1770, 2015.

Hande Topa, Antti Honkela. Analysis of differential splicing suggests different modes of short-term splicing regulation. Bioinformatics 32(12):i147-i155, 2016.

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Corresponding BibTeX entries:

  @Article{,
    author = {Hande Topa and Ágnes Jónás and Robert Kofler and Carolin
      Kosiol and Antti Honkela},
    title = {Gaussian process test for high-throughput sequencing time
      series: application to experimental evolution},
    journal = {Bioinformatics},
    year = {2015},
    volume = {31},
    pages = {1762-1770},
    number = {11},
  }

  @Article{,
    author = {Hande Topa and Antti Honkela},
    title = {Analysis of differential splicing suggests different modes
      of short-term splicing regulation},
    journal = {Bioinformatics},
    year = {2016},
    volume = {32},
    pages = {i147-i155},
    number = {12},
  }