Many inherited biases and effects exists in RNA-seq due to both biological and technical effects. We observed the biological variance of testing target transcripts can influence the yield of sequencing reads, which might indicate a resource competition existing in RNA-seq. We developed this package to capture the bias depending on local sequence and perform the correction of this type of bias by borrowing information from spike-in measurement.
| Version: | 1.0 |
| Depends: | R (≥ 2.10) |
| Published: | 2014-07-16 |
| Author: | Guoshuai Cai |
| Maintainer: | Guoshuai Cai <GCAI.bioinfo at gmail.com> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: | no |
| CRAN checks: | GCAI.bias results |
| Reference manual: | GCAI.bias.pdf |
| Package source: | GCAI.bias_1.0.tar.gz |
| Windows binaries: | r-devel: GCAI.bias_1.0.zip, r-release: GCAI.bias_1.0.zip, r-oldrel: GCAI.bias_1.0.zip |
| macOS binaries: | r-release: GCAI.bias_1.0.tgz, r-oldrel: GCAI.bias_1.0.tgz |
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