To cite the comparative chi-squared test in publications use:

Song M, Zhang Y, Katzaroff AJ, Edgar BA, Buttitta L (2014). “Hunting complex differential gene interaction patterns across molecular contexts.” Nucleic Acids Research, 42(7), e57. doi: 10.1093/nar/gku086.

Zhang Y, Liu ZL, Song M (2015). “ChiNet uncovers rewired transcription subnetworks in tolerant yeast for advanced biofuels conversion.” Nucleic Acids Research, 43(9), 4393–4407. doi: 10.1093/nar/gkv358.

To cite the Sharma-Song test in publications use:

Sharma R, Song M (2019). DiffXTables: Distributional Differences Across Contingency Tables. R package version 0.1.0, https://CRAN.R-project.org/package=DiffXTables.

Corresponding BibTeX entries:

  @Article{song2014hunting,
    title = {Hunting complex differential gene interaction patterns
      across molecular contexts},
    journal = {Nucleic Acids Research},
    year = {2014},
    volume = {42},
    number = {7},
    pages = {e57},
    author = {Mingzhou Song and Yang Zhang and Alexia J. Katzaroff and
      Bruce A. Edgar and Laura Buttitta},
    doi = {10.1093/nar/gku086},
  }

  @Article{zhang2015chinet,
    title = {{ChiNet} uncovers rewired transcription subnetworks in
      tolerant yeast for advanced biofuels conversion},
    journal = {Nucleic Acids Research},
    year = {2015},
    volume = {43},
    number = {9},
    pages = {4393--4407},
    author = {Yang Zhang and Z. Lewis Liu and Mingzhou Song},
    doi = {10.1093/nar/gkv358},
  }

  @Manual{sharma2020diffxtables,
    title = {DiffXTables: Distributional Differences Across Contingency
      Tables},
    author = {Ruby Sharma and Mingzhou Song},
    year = {2019},
    note = {R package version 0.1.0},
    url = {https://CRAN.R-project.org/package=DiffXTables},
  }