Individual gene expression patterns are encoded into a series of eigenvector patterns ('WGCNA' package). Using the framework of linear model-based differential expression comparisons ('limma' package), time-course expression patterns for genes in different conditions are compared and analyzed for significant pattern changes. For reference, see Kathleen Greenham, Ryan C Sartor, Stevan Zorich, Ping Lou, Todd C Mockler and C. Robertson McClung (2020) <doi:10.1101/2020.04.03.024281>.
| Version: | 1.0 |
| Depends: | R (≥ 2.10) |
| Imports: | limma, WGCNA, ggplot2 |
| Suggests: | edgeR |
| Published: | 2020-05-05 |
| Author: | Ryan C. Sartor, Kathleen Greenham |
| Maintainer: | Ryan C. Sartor <sartorry at gmail.com> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: | no |
| Citation: | DiPALM citation info |
| CRAN checks: | DiPALM results |
| Reference manual: | DiPALM.pdf |
| Package source: | DiPALM_1.0.tar.gz |
| Windows binaries: | r-devel: DiPALM_1.0.zip, r-release: DiPALM_1.0.zip, r-oldrel: DiPALM_1.0.zip |
| macOS binaries: | r-release: DiPALM_1.0.tgz, r-oldrel: not available |
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