DataSpaceR 0.7.3
- Remove
tolower in functions that check study names. (thanks @jmtaylor-fhcrc #23)
- Update DataSpaceStudy methods for non-integrated datasets. (thanks @helenmiller16 #24)
DataSpaceR 0.7.2
- Fix broken and invalid URLs for CRAN submission
DataSpaceR 0.7.1
- Fix broken and invalid URLs for CRAN submission
DataSpaceR 0.7.0
- Added
DataSpaceMab class and several methods and fields in DataSpaceConnection to allow access to monoclonal antibody data (thanks @jmtaylor-fhcrc #14, #19, #21)
DataSpaceR 0.6.3
- Prepare for CRAN submission
DataSpaceR 0.6.2
- Write the netrc in temporary directory as default in
writeNetrc. (CRAN requirement)
DataSpaceR 0.6.1
- Remove LICENSE file for CRAN submission
DataSpaceR 0.6.0
- rOpenSci submission: https://github.com/ropensci/software-review/issues/261
DataSpaceR 0.5.2
- Modified
getDataset method in DataSpaceStudy to take mergeExtra as an argument in order to merge extra information (demographics and treatment arm). #5
DataSpaceR 0.5.1
- Adjusted the package to use the latest version of Rlabkey (v2.2) and httr packages.
DataSpaceR 0.5.0
- Modified
DataSpaceConnection and DataSpaceStudy classes to convert data.frame objects to data.table.
- Added a package startup message on the terms of use.
- Created
getGroup method in DataSpaceConnection class and deprecated groupId in getStudy method.
DataSpaceR 0.4.2
- Added
refresh method for both connection and study classes.
- Added
studyInfo field in study class.
DataSpaceR 0.4.1
- Included additional columns (
short_name, type, status, stage, species, start_date, strategy) in availableStudies.
- Updated the introductory vignette.
DataSpaceR 0.4.0
- Added
availableGroups field to DataSpaceConnection class.
- Modified
getStudy method in DataSpaceConnection to take groupId as an argument in order to create a DataSpaceStudy object for a particular group.
DataSpaceR 0.3.0
- Updated
DataSpaceConnection class and connectDS constructor to be not study-specific.
DataSpaceR 0.2.1
- Modified
getUserEmail() to get email from netrc file.
- Updated license to GPL-3.
DataSpaceR 0.2.0
- Added
getVariableInfo method to DataSpaceConnection class.
- Changed variable names in
getAvailableDatasets to lowercase.
- Added
treatmentArm field to DataSpaceConnection class.
- Removed
getAvailableDatasets method (now a private method).
- Changed the default connection from staging (
dataspace-staging.cavd.org) to production (dataspace.cavd.org).
- Added an option to connect to the staging server.
- Renamed
write_netrc and check_netrc to writeNetrc and checkNetrc.
DataSpaceR 0.1.0
- Initialized the package with
connectDS() and other basic functions.
- Added a test framework on
tests to test the package.
- Added
.travis.yml to build and check the package automatically. (not used yet)
- Added
codecov.yml to track code coverage. (not used yet)
- Added
README.Rmd to introduce the package.
- Added
NEWS.md to track changes to the package.
- Added
_pkgdown.yml and /docs to build a package website.
- Added a introductory vignette called
Intro_to_DataSpaceR.Rmd.