DataSpaceR 0.7.3
- Remove
tolower
in functions that check study names. (thanks @jmtaylor-fhcrc #23)
- Update DataSpaceStudy methods for non-integrated datasets. (thanks @helenmiller16 #24)
DataSpaceR 0.7.2
- Fix broken and invalid URLs for CRAN submission
DataSpaceR 0.7.1
- Fix broken and invalid URLs for CRAN submission
DataSpaceR 0.7.0
- Added
DataSpaceMab
class and several methods and fields in DataSpaceConnection
to allow access to monoclonal antibody data (thanks @jmtaylor-fhcrc #14, #19, #21)
DataSpaceR 0.6.3
- Prepare for CRAN submission
DataSpaceR 0.6.2
- Write the netrc in temporary directory as default in
writeNetrc
. (CRAN requirement)
DataSpaceR 0.6.1
- Remove LICENSE file for CRAN submission
DataSpaceR 0.6.0
- rOpenSci submission: https://github.com/ropensci/software-review/issues/261
DataSpaceR 0.5.2
- Modified
getDataset
method in DataSpaceStudy
to take mergeExtra
as an argument in order to merge extra information (demographics and treatment arm). #5
DataSpaceR 0.5.1
- Adjusted the package to use the latest version of Rlabkey (v2.2) and httr packages.
DataSpaceR 0.5.0
- Modified
DataSpaceConnection
and DataSpaceStudy
classes to convert data.frame objects to data.table.
- Added a package startup message on the terms of use.
- Created
getGroup
method in DataSpaceConnection
class and deprecated groupId
in getStudy
method.
DataSpaceR 0.4.2
- Added
refresh
method for both connection and study classes.
- Added
studyInfo
field in study class.
DataSpaceR 0.4.1
- Included additional columns (
short_name
, type
, status
, stage
, species
, start_date
, strategy
) in availableStudies
.
- Updated the introductory vignette.
DataSpaceR 0.4.0
- Added
availableGroups
field to DataSpaceConnection
class.
- Modified
getStudy
method in DataSpaceConnection
to take groupId
as an argument in order to create a DataSpaceStudy
object for a particular group.
DataSpaceR 0.3.0
- Updated
DataSpaceConnection
class and connectDS
constructor to be not study-specific.
DataSpaceR 0.2.1
- Modified
getUserEmail()
to get email from netrc file.
- Updated license to GPL-3.
DataSpaceR 0.2.0
- Added
getVariableInfo
method to DataSpaceConnection
class.
- Changed variable names in
getAvailableDatasets
to lowercase.
- Added
treatmentArm
field to DataSpaceConnection
class.
- Removed
getAvailableDatasets
method (now a private method).
- Changed the default connection from staging (
dataspace-staging.cavd.org
) to production (dataspace.cavd.org
).
- Added an option to connect to the staging server.
- Renamed
write_netrc
and check_netrc
to writeNetrc
and checkNetrc
.
DataSpaceR 0.1.0
- Initialized the package with
connectDS()
and other basic functions.
- Added a test framework on
tests
to test the package.
- Added
.travis.yml
to build and check the package automatically. (not used yet)
- Added
codecov.yml
to track code coverage. (not used yet)
- Added
README.Rmd
to introduce the package.
- Added
NEWS.md
to track changes to the package.
- Added
_pkgdown.yml
and /docs
to build a package website.
- Added a introductory vignette called
Intro_to_DataSpaceR.Rmd
.